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Cellular-Semantics / whole_human_brain_ontology

A data-driven cell-type ontology of the human brain.
Apache License 2.0
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Missing links to NS-Forest markers in KG #15

Open dosumis opened 1 year ago

dosumis commented 1 year ago

For some reason, has_part links to NS Forest markers are not showing up in KG

image image image
dosumis commented 1 year ago

I'm wondering whether it's because they are all in one axiom, rather than 3 separate - even though these are semantically identical.

hkir-dev commented 1 year ago

Yes, this was an neo4j2owl issue we faced in bdso. As a workaround, we added a Sparql query that expands intersectionOf definitions https://github.com/obophenotype/bds-pipeline-config/blob/dev/config/dumps/sparql/construct_subclass_of_intersection.sparql

I will add this query to OBASK as quick fix then, I will investigate neo4j2owl issue in detail.

hkir-dev commented 1 year ago

https://github.com/hkir-dev/whbo_pipeline updated to fix the issue. image