Improve text definitions

Cellular-Semantics / whole_human_brain_ontology

A data-driven cell-type ontology of the human brain.

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Improve text definitions #20

Closed dosumis closed 10 months ago

dosumis commented 10 months ago

Genus in text definitions of data-linked classes is driven by config specification of root nodes. This leads to some odd looking cases where a very specific cell types for which we have a classification but a very generic genus in the text definition: e.g.

I think better to be able to utilise the more specific classification in the curation table. I don't recall why we don't do this as the curation table is DOSDP and so should be accessible to text generation.

dosumis commented 10 months ago

A major reason we've added so many "root" terms in the config is to (partly) get around this issue.

hkir-dev commented 10 months ago

Curation table is accessible to text generation. But we don't have if logic in dospd, so we cannot say if Classification defined use it, otherwise use Gross_cell_type. So I will add gross classifications to the Classification column if a more specific classification is not defined. Then I will use Classification to roll descriptions (and label & synonyms as well?)

dosumis commented 10 months ago

Sounds good.

hkir-dev commented 10 months ago

New label: URL_308 unipolar brush cell (Hsap) New desc: A unipolar brush cell of the Homo sapiens brain. These cells can be distinguished from other cells in the brain by their selective expression of EOMES (Hsap), RP11-312A15.5 (Hsap). The soma of these cells can be found in the cerebellum, pons. The reference data for this cell type is CS202210140_309.