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Cem-Gulec / scPower-Cell-Atlas

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Not able to read new lung dataset #10

Open Cem-Gulec opened 1 year ago

Cem-Gulec commented 1 year ago

Describe the bug image

Expected behavior That's the normal way of how I load h5seurat files. Should I work on some other way to load it? Maybe with having a python environment linked with R

Cem-Gulec commented 11 months ago

Check: https://github.com/LungCellAtlas/HLCA_reproducibility/blob/main/notebooks/2_downstream_analysis_of_HLCA_core/01_variance_contribution_of_tech_and_bio_covariates.ipynb