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CenterForMedicalGeneticsGhent / PREFACE

PREFACE -- PREdict FetAl ComponEnt
GNU General Public License v3.0
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Script cannot read config file even though it is stripped out of the example file #4

Closed KhanhLPBao closed 3 years ago

KhanhLPBao commented 3 years ago

I tried to make the model for prediction FF from 852 samples. However everytime I run the script returned this error

Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : scan() expected 'a real', got 'n/a' Calls: train -> read.csv -> read.table -> scan Execution halted

Even though I have download the example config file and rename all of my samples like on the config with adjust the path. It still give me that error. I'm using R 3.6.3 to run PREFACE

leraman commented 3 years ago

What do you mean with 'stripped out of the example file'? The error states you have missing values formatted as 'n/a'?

KhanhLPBao commented 3 years ago

I mean I copy the config file and then just modified the ff and gender. I have recheck the file and found a typo. Thank you very much

smruti241 commented 3 years ago

Hii @KhanhLPBao I am using PREFACE after WISECONDOR for fetal fraction detection. I got the point how to create bed file but i ma not getting where to get config file? I have raised this issue too but didnt get reply. I hope you have worked on all these tools, so need your help. Please help me regarding this. I am trying for the last 2 months but getting partial knowledge only.