Trying to open some CSV files exported by PEAKS fails because of the following code block in check_file():
if(search_engine == "PEAKS") { if(!any(store1[1:15] ==",")){ stop("For the search software PEAKS, the expected file type is .csv") }
Some PEAKS output CSV files start with "Protein Group","Accession",etc in which the first comma occurs in position 16, meaning that PrintMap-R stops with the message about the file not being a CSV file. Changing the test for a comma to if(!any(store1[1:30] ==",")) prevents this from happening. The files then load successfully and PrintMap-R works as expected.
Trying to open some CSV files exported by PEAKS fails because of the following code block in check_file():
if(search_engine == "PEAKS") { if(!any(store1[1:15] ==",")){ stop("For the search software PEAKS, the expected file type is .csv") }Some PEAKS output CSV files start with "Protein Group","Accession",etc in which the first comma occurs in position 16, meaning that PrintMap-R stops with the message about the file not being a CSV file. Changing the test for a comma to
if(!any(store1[1:30] ==","))prevents this from happening. The files then load successfully and PrintMap-R works as expected.Please make the suggested change to check_file().
Thanks Stephen