ChangLab FAST-iCLIP issues

ChangLab / FAST-iCLIP

Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

GNU General Public License v2.0

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issues

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Could you tell me the index download link?

#34 tianxiahuihui closed 4 years ago
2
Can't run example data - error "re-reun with the -g option for a genome file"

#33 natsampaio opened 6 years ago
1
Can't run the example.

#32 AmirArgoetti opened 7 years ago
1
FAST-iCLIP/docs/GRCm38/exons.bed has the same start and end coordinate

#31 Shirleyyyyyy opened 7 years ago
0
Not able to run example

#30 marencc opened 7 years ago
3
Single-End reads?

#29 marencc closed 7 years ago
1
Update docs.tar.gz

#28 bdo311 closed 7 years ago
0
Support cases when there are 0 retroviral reads

#27 bdo311 opened 7 years ago
0
Bowtie prints out results as "error"

#26 bdo311 opened 7 years ago
0
problem in provided annotations

#25 andypohl opened 7 years ago
0
expected output for example?

#24 andypohl opened 7 years ago
6
PyQt4

#23 andypohl closed 7 years ago
2
virus_to_beds

#22 drli closed 7 years ago
1
getBedCenterPoints now needs 3 arguments.

#21 yunhailuo closed 8 years ago
0
fails with samtools >1.3

#20 dy7t opened 8 years ago
1
retroviralMapping.py must be exectuded in FAST-iCLIP directory

#19 EricDeveaud opened 8 years ago
0
motifAnalysis.py can't find docs if executed outside of FAST-iCLIP directory

#18 EricDeveaud opened 8 years ago
0
ViralGenome_analysis.py can't find docs if executed outside of FAST-iCLIP directory

#17 EricDeveaud opened 8 years ago
0
missing harcoded docs/mm9/mm9_ensembl_genes_BED6.bed

#16 EricDeveaud opened 8 years ago
0
exit with value != 0 if err

#15 EricDeveaud opened 8 years ago
0
installer does not install programs in bin

#14 EricDeveaud opened 8 years ago
0
install doc does not talk about FASTICLIP_PATH

#13 EricDeveaud opened 8 years ago
0
make perl configurable

#12 EricDeveaud opened 8 years ago
0
dos2unix :: dependency not documented

#11 EricDeveaud opened 8 years ago
0
CLIPper (now optional) but configure do'nt knnow about it

#10 EricDeveaud closed 7 years ago
1
Update docs.tar.gz

#9 bdo311 closed 7 years ago
0
matplotlib-venn needs to be included in setuptools

#8 bdo311 opened 8 years ago
0
Make sure CLIPper works, or remove it

#7 bdo311 closed 8 years ago
0
Find the changelog / start updating that

#6 bdo311 closed 8 years ago
0
Move all params to cfg.py

#5 bdo311 opened 8 years ago
0
Organize output files into subfolders

#4 bdo311 closed 8 years ago
1
Integrate STAR into next release

#3 bdo311 closed 8 years ago
1
Gun t2

#2 gwbyeon closed 8 years ago
0
Fix bedtools intersect

#1 enguy closed 9 years ago
1