search

ChangSuBiostats / CS-CORE

R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data
https://changsubiostats.github.io/CS-CORE/
Other
15 stars 0 forks source link

Error during "Select cell types and gene sets to study" step #3

Open joannaslotaczarny opened 2 months ago

joannaslotaczarny commented 2 months ago

Hi,

I am going through your vignette. I have error after I type command: pbmc_B = pbmc[,pbmc$cell.type.coarse %in% 'B']

Error:

Error in h(simpleError(msg, call)) : error in evaluating the argument 'j' in selecting a method for function '[': no slot of name "images" for this object of class "Seurat"

what could be wrong?

ChangSuBiostats commented 2 months ago

Hi,

Thanks for your question. Can you make sure that you are doing the analysis in a new R session, share your sessionInfo(), and maybe share your codes so that I can try to reproduce the error for debugging?

Thanks, Chang

From: joannaslotaczarny @.> Date: Friday, August 23, 2024 at 4:45 AM To: ChangSuBiostats/CS-CORE @.> Cc: Subscribed @.***> Subject: [External] [ChangSuBiostats/CS-CORE] Error during "Select cell types and gene sets to study" step (Issue #3)

Hi,

I am going through your vignette. I have error after I type command: pbmc_B = pbmc[,pbmc$cell.type.coarse %in% 'B']

Error:

Error in h(simpleError(msg, call)) : error in evaluating the argument 'j' in selecting a method for function '[': no slot of name "images" for this object of class "Seurat"

what could be wrong?

— Reply to this email directly, view it on GitHubhttps://github.com/ChangSuBiostats/CS-CORE/issues/3, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AHGSYMSSTMXNSPORDDGS57TZS3ZCBAVCNFSM6AAAAABM7XOXZ2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGQ4DENRUGA4TMNQ. You are receiving this because you are subscribed to this thread.Message ID: @.***>