I am using the prepare_ENCODEdb and export_ENCODEdb_matrix to get the latest ENCODE data. I can pass the result to queryEncode with the argument df = encode_df2. However, it seems that inside the queryEncode function it is always using encode_df and not the passed df value. I can get around the issue by calling my result from prepare_ENCODEdb and export_ENCODEdb_matrix encode_df instead of encode_df2.
Hi,
I am using the prepare_ENCODEdb and export_ENCODEdb_matrix to get the latest ENCODE data. I can pass the result to queryEncode with the argument df = encode_df2. However, it seems that inside the queryEncode function it is always using encode_df and not the passed df value. I can get around the issue by calling my result from prepare_ENCODEdb and export_ENCODEdb_matrix encode_df instead of encode_df2.
Thanks, Karen