When I call python Edge_removal.py in the MISA directory after following the first steps, I obtain the error below. I am using Python3.8, and numpy version 1.22.3. Are they the right versions?
python Edge_removal.py
---------- Use this Use this part to infer the structure of GRNs ----------
-- You need to wait about 10 seconds to obtain picture The_role_X1.png
---------- import the DNN model ----------
---------- import DNN is finish ----------
---------- get the original sequence ----------
---------- block the link from X1 to X1 ----------
---------- block the link from X1 to X2 ----------
---------- block the link from X2 to X1 ----------
---------- block the link from X2 to X2 ----------
---------- begin picture ----------
Traceback (most recent call last):
File "Edge_removal.py", line 167, in <module>
plt.plot(tt, x_1, label='X1-before', color='#98FB98', linewidth=4.0) # pale green
File "/home/gfilion/miniconda3/envs/temp/lib/python3.8/site-packages/matplotlib/pyplot.py", line 2769, in plot
return gca().plot(
File "/home/gfilion/miniconda3/envs/temp/lib/python3.8/site-packages/matplotlib/axes/_axes.py", line 1632, in plot
lines = [*self._get_lines(*args, data=data, **kwargs)]
File "/home/gfilion/miniconda3/envs/temp/lib/python3.8/site-packages/matplotlib/axes/_base.py", line 312, in __call__
yield from self._plot_args(this, kwargs)
File "/home/gfilion/miniconda3/envs/temp/lib/python3.8/site-packages/matplotlib/axes/_base.py", line 488, in _plot_args
y = _check_1d(xy[1])
File "/home/gfilion/miniconda3/envs/temp/lib/python3.8/site-packages/matplotlib/cbook/__init__.py", line 1306, in _check_1d
return np.atleast_1d(x)
File "<__array_function__ internals>", line 180, in atleast_1d
File "/home/gfilion/.local/lib/python3.8/site-packages/numpy/core/shape_base.py", line 65, in atleast_1d
ary = asanyarray(ary)
File "/home/gfilion/miniconda3/envs/temp/lib/python3.8/site-packages/torch/tensor.py", line 486, in __array__
return self.numpy()
RuntimeError: Can't call numpy() on Variable that requires grad. Use var.detach().numpy() instead.
When I call
python Edge_removal.py
in theMISA
directory after following the first steps, I obtain the error below. I am using Python3.8, and numpy version 1.22.3. Are they the right versions?