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ChenFengling / RHiCDB

detect and visualize contact domain boundaries (CDBs) or differential CDBs from Hi-C (R version)
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Error in N/resolution : non-numeric argument to binary operator #4

Closed edf5 closed 4 years ago

edf5 commented 4 years ago

RHiCDB('LentiAS2.50000.matrices/',resolution=50000,chrsizes=chrsizes,ref=ref,wd=wd, mind=mind,wdsize=wdsize) [1] "One sample is provided, detect CDBs!" [1] "* Detect all local maximum peaks on each chromosome." [1] "Processing chr1" Error in N/resolution : non-numeric argument to binary operator

Matrices are in sparse format (head of chr1.matrix): 0 50000 67.345813 0 150000 5.691894 0 250000 33.409046 0 300000 13.940334 0 400000 25.948924

chrsizes in recommended format: chr1 282763074 chr2 266435125 chr3 177699992 chr4 184226339 chr5 173707219

ref sites are in recommended format: 1 33325 1 33371 1 71312 1 71370 1 72375 1 74602 1 135340

wd=1 mind=2 wdsize=6

What could be the problem? Program downloaded on 5/6/2020. R version 4.0.0.

edited:

The problem was with the chrsizes file, which should have only one column with the sizes.

Sorry.

Thank you