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ChenMengjie / VIPER

MIT License
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Is there any size limitations #5

Closed mmfalco closed 3 years ago

mmfalco commented 4 years ago

Hello, I found your imputation method very interesting and I'm trying to apply it to a 25k cells matrix. Since it has been running for 3 days now without any outputs I wonder if there is any size limitation for your method. As a suggestion I would add something of verbose, because I don't know if it's still running or already crashed. I found also interesting #3 question about if there is any way to parallelize this method. Thanks in advance

mmfalco commented 3 years ago

As replied here : " Sorry it is not developed for 10X particularly. I would image that will be very slow. We have a new method, called HIPPO, for 10X datasets. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02096-y Would you please take a look? I think that may be a better fit."