ChiLab-UCSD / Heart_MERFISH_analysis

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Clarification on Shared Cell Type IDs in CCC Analysis for Inner-LV and Inner-RV Communities #3

Open jiehuichen opened 2 months ago

jiehuichen commented 2 months ago

Dear Chi Lab,

Thanks for the great work. I have a minor question below:

In the Cell-Cell Communication (CCC) analysis, cell types that represent more than 3.5% are extracted as the main cell types of a community. In the demo script, we noticed that some communities share certain cell types. For example, both the Inner-LV and Inner-RV communities include "Trabecular vFibro" cells.

Could you please clarify whether the IDs of the Trabecular vFibro cells used for CCC analysis in the Inner-LV community are the same as those used in the Inner-RV community?

Thank you for your assistance!