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ChiLiubio / microeco

An R package for data analysis in microbial community ecology
GNU General Public License v3.0
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concordance between differential abundance methods #174

Open guianrey opened 1 year ago

guianrey commented 1 year ago

Dear Is there a way to link the results of each biomarker resulting from the Lefse, ancombc, metagenomeSeq and Aldex2 analyses? I was doing an analysis of all of them and I see that some of them coincide but I would like to plot the result of all the differential abundance analyses (i.e plotting mutual biomarkers) to have more concistence of biomarkers.

Best

Guillermo

ChiLiubio commented 1 year ago

Hi @guianrey

Good idea! I will think about it in the next release. Now, if you need to compare these results, you can extract the result (res_diff in the object, just a table) from each object and operate those tables to visualize. It is a little time-consuming but not hard I guess.

Best, Chi

guianrey commented 1 year ago

Thank you very much for your prompt reply

I will follow your advice and download the tables of da results, I will be looking forward to your next version of microeco.

Best Guillermo