Closed marwa38 closed 1 year ago
Sorry. It is a bug. I have updated the package in github again. Please reinstall it from github and try again. Remember to use method = "ancombc2"
instead of method = "ANCOMBC"
. Please rerun the result starting with creating the trans_diff project.
Thanks for your finding.
Thanks Chi for this.
I removed the package using remove.packages() I am still getting an error if I used either
install.packages()or
devtools::install_github("ChiLiubio/microeco")`
Hi. What is your version of ANCOMBC package? It seems like no ancombc2 function is found in your ANCOMBC package. I am using version 2.0.2. If it is old, please update ANCOMBC package too.
yes, I was using R before version R4.2 and thus ancombc2 was an older version switched to the R4.2.2 and it is working fine. Thanks Marwa
I have more than one
t
objects for the trans_diff classes for different differential abundance methods. In each method I ranplot_diff_bar
andplot_diff_abund
and I get outputs successfully for both except fort52
I get the following error forplot_diff_abund
although I got theplot_diff_bar
output:attached rds of
t52
and the scripts kindly see belowCould you please let me know why I might be getting this? knowing that I restarted R and removed all the environment and read the rds again.
My understanding is that
plot_diff_bar
plot the significant taxa that are differentially abundant in different groups, whereasplot_diff_abund
plot relative abundances of the significant taxa in one group beside other taxa from other groups ... please comment.