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ChiLiubio / microeco

An R package for data analysis in microbial community ecology
GNU General Public License v3.0
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phyloseq2meco function of microeco doesnt work for me #276

Closed marjanghotbi closed 9 months ago

marjanghotbi commented 9 months ago

Hi ChiLiubio, I am trying to transfer phyloseq to microtable, I installed microeco and loaded that, but unfortunately the function doesn't for me. ps.G.vermi.SW <- subset_samples ( ps.SW, Treatment == "G. vermiculophylla" )

ps.G.vermi.SW phyloseq-class experiment-level object otu_table() OTU Table: [ 12872 taxa and 10 samples ] sample_data() Sample Data: [ 10 samples by 18 sample variables ] tax_table() Taxonomy Table: [ 12872 taxa by 7 taxonomic ranks ] meco_dataset <- phyloseq2meco (ps.G.vermi.SW ) Error in phyloseq2meco(ps.G.vermi.SW) : could not find function "phyloseq2meco"

Look forward to your reply,

Best, Marjan

marjanghotbi commented 9 months ago

Hi ChiLiubio, I got that I needed to install package (file2meco) for that function. So problem solved.
Thanks.