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ChiLiubio / microeco

An R package for data analysis in microbial community ecology
GNU General Public License v3.0
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Error in guides_train(scales = scales$non_position_scales(), theme = theme, : could not find function "guides_train" #331

Closed PPpissar closed 5 months ago

PPpissar commented 7 months ago

Hello,

This error was introduced after the update of ggplot2 from version 3.4.0 to 3.5.0. Even with the new update of microeco today this problem was not solve.

t2$plot_tern()

Input colors are not enough to use. Add more colors automatically via color interpolation ... Registered S3 methods overwritten by 'ggtern': method from
grid.draw.ggplot ggplot2 plot.ggplot ggplot2 print.ggplot ggplot2

Error in guides_train(scales = scales$non_position_scales(), theme = theme, : could not find function "guides_train"

What can we do?

ChiLiubio commented 6 months ago

Hi. Yes. The ggplot2 3.5.0 has a new guide system (https://github.com/tidyverse/ggplot2/releases). The ggtern package in CRAN is built based on the previous ggplot2 version. It is not easy to solve by simply adding a function. How about installing a ggplot2 3.4 to do it temporarily.

PPpissar commented 6 months ago

Hi, I have already tried this but because of the many packages linked to ggplot2 I get this

Error in unloadNamespace(package) : namespace ‘ggplot2’ is imported by ‘ggplotify’, ‘patchwork’, ‘microbiome’, ‘ggfun’, ‘phyloseq’, ‘ggpubr’, ‘ggtree’, ‘aplot’, ‘microeco’ so cannot be unloaded

ChiLiubio commented 6 months ago

Hi. The author of ggtern package has updated it in CRAN and solved the issue by forcing ggplot2 >= 3.5. Please reinstall the ggtern and try again.

PPpissar commented 6 months ago

Thank you very much! I have done the update and it's working fine!!!

Best,

Panayiota

Sent from my Galaxy

-------- Original message -------- From: Chi Liu @.> Date: 30/03/2024 07:08 (GMT+02:00) To: ChiLiubio/microeco @.> Cc: Panayiota Pissaridou @.>, Author @.> Subject: Re: [ChiLiubio/microeco] Error in guides_train(scales = scales$non_position_scales(), theme = theme, : could not find function "guides_train" (Issue #331)

Hi. The author of ggtern package has updated it in CRAN and solved the issue by forcing ggplot2 >= 3.5. Please reinstall the ggtern and try again.

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