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ChiLiubio / microeco

An R package for data analysis in microbial community ecology
GNU General Public License v3.0
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MEGAN output to microeco #343

Open spe238 opened 3 months ago

spe238 commented 3 months ago

I have a metatrascnriptomics dataset that I extracted from MEGAN. It is in a wide format and has taxonomic units in rows, and samples in columns. I could easily transform it into a long format, and also add more metadata, if needed. Now, I wonder, if there is an easy way to import this kind of dataset into microeco.

ChiLiubio commented 3 months ago

Hi. The import functions are all in the file2meco package (https://github.com/ChiLiubio/file2meco). However, there are currently no mature functions available to directly import MEGAN results into a microtable object. We will consider adding such functions. Thanks.

Best, Chi