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Chilipp / straditize

⛔️ Python package for digitizing pollen diagrams
https://straditize.readthedocs.io
GNU General Public License v3.0
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Straditize fails to launch #19

Open olijw opened 4 years ago

olijw commented 4 years ago

Hi,

A lot like Brian in Issue #17, I'd love to use Straditize in my research but haven't been able to launch it successfully, despite trying on three separate computers now. I've followed the installation instructions on your website and also tried the solution that resolved #17, but I get similar errors each time. Running...

conda install -n base -c defaults --override-channels anaconda-client
conda env create -n straditize chilipp/straditize-env
conda activate straditize

...all works fine (as does the standard installation of just the latter two lines), but when I type...

straditize

...I get the following:

``` (straditize) C:\Users\olijw>straditize Traceback (most recent call last): File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Scripts\straditize-script.py", line 6, in from straditize.__main__ import main File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\straditize\__main__.py", line 21, in from psyplot_gui import docstrings File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot_gui\__init__.py", line 15, in import psyplot File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\__init__.py", line 7, in from psyplot.config.rcsetup import rcParams File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\config\__init__.py", line 13, in from .rcsetup import psyplot_fname File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py", line 25, in @docstrings.get_sectionsf('safe_list') File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\docrep\decorators.py", line 110, in deprecated return func(self, *args, **kwargs) File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\docrep\__init__.py", line 927, in get_sectionsf return self.get_sections(base=args[0], *args[1:], **kwargs) TypeError: get_sections() missing 1 required positional argument: 's' ```

This same error text ("TypeError: get_sections() missing 1 required positional argument: 's'") has come up most times I've tried to launch Straditize now, and I'm not sure how to fix it. Any help you can give would be very gratefully received!

Thanks,

Oli

ps, while this is certainly annoying, it doesn't feel like the weirdest error message I've had trying to use Straditize: my old laptop (Windows 8.1) would give me a pop-up error window saying "This Windows version (6.3.9600) does not support the required Bluetooth API. Consider updating to a more recent Windows (10.0.10586 or above)." Quite why Bluetooth was involved I have no idea..!

Additional information on this problem:

Environment information

``` (straditize) C:\Users\olijw>psyplot -aV Traceback (most recent call last): File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Scripts\psyplot-script.py", line 6, in from psyplot.__main__ import main File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\__init__.py", line 7, in from psyplot.config.rcsetup import rcParams File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\config\__init__.py", line 13, in from .rcsetup import psyplot_fname File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py", line 25, in @docstrings.get_sectionsf('safe_list') File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\docrep\decorators.py", line 110, in deprecated return func(self, *args, **kwargs) File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\docrep\__init__.py", line 927, in get_sectionsf return self.get_sections(base=args[0], *args[1:], **kwargs) TypeError: get_sections() missing 1 required positional argument: 's' ```
``` (straditize) C:\Users\olijw>straditize -V Traceback (most recent call last): File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Scripts\straditize-script.py", line 6, in from straditize.__main__ import main File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\straditize\__main__.py", line 21, in from psyplot_gui import docstrings File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot_gui\__init__.py", line 15, in import psyplot File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\__init__.py", line 7, in from psyplot.config.rcsetup import rcParams File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\config\__init__.py", line 13, in from .rcsetup import psyplot_fname File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py", line 25, in @docstrings.get_sectionsf('safe_list') File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\docrep\decorators.py", line 110, in deprecated return func(self, *args, **kwargs) File "C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\lib\site-packages\docrep\__init__.py", line 927, in get_sectionsf return self.get_sections(base=args[0], *args[1:], **kwargs) TypeError: get_sections() missing 1 required positional argument: 's' ```
``` (straditize) C:\Users\olijw>conda info -a active environment : C:\Users\olijw\miniconda3\envs\straditize\envs\straditize active env location : C:\Users\olijw\miniconda3\envs\straditize\envs\straditize shell level : 3 user config file : C:\Users\olijw\.condarc populated config files : conda version : 4.8.4 conda-build version : not installed python version : 3.8.3.final.0 virtual packages : __cuda=10.2 base environment : C:\Users\olijw\miniconda3 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/win-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/win-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/msys2/win-64 https://repo.anaconda.com/pkgs/msys2/noarch package cache : C:\Users\olijw\miniconda3\pkgs C:\Users\olijw\.conda\pkgs C:\Users\olijw\AppData\Local\conda\conda\pkgs envs directories : C:\Users\olijw\miniconda3\envs C:\Users\olijw\.conda\envs C:\Users\olijw\AppData\Local\conda\conda\envs platform : win-64 user-agent : conda/4.8.4 requests/2.23.0 CPython/3.8.3 Windows/10 Windows/10.0.18362 administrator : False netrc file : None offline mode : False # conda environments: # base C:\Users\olijw\miniconda3 straditize C:\Users\olijw\miniconda3\envs\straditize * C:\Users\olijw\miniconda3\envs\straditize\envs\straditize sys.version: 3.8.3 (default, May 19 2020, 06:50:17) [... sys.prefix: C:\Users\olijw\miniconda3 sys.executable: C:\Users\olijw\miniconda3\python.exe conda location: C:\Users\olijw\miniconda3\lib\site-packages\conda conda-build: None conda-env: C:\Users\olijw\miniconda3\Scripts\conda-env.exe conda-server: C:\Users\olijw\miniconda3\Scripts\conda-server.exe user site dirs: CIO_TEST: CONDA_DEFAULT_ENV: straditize CONDA_EXE: C:\Users\olijw\miniconda3\condabin\..\Scripts\conda.exe CONDA_EXES: "C:\Users\olijw\miniconda3\condabin\..\Scripts\conda.exe" CONDA_PREFIX: C:\Users\olijw\miniconda3\envs\straditize\envs\straditize CONDA_PREFIX_1: C:\Users\olijw\miniconda3 CONDA_PREFIX_2: C:\Users\olijw\miniconda3\envs\straditize CONDA_PROMPT_MODIFIER: (straditize) CONDA_PYTHON_EXE: C:\Users\olijw\miniconda3\envs\straditize\python.exe CONDA_ROOT: C:\Users\olijw\miniconda3 CONDA_SHLVL: 3 CURL_CA_BUNDLE: HOMEPATH: \Users\olijw PATH: C:\Users\olijw\miniconda3;C:\Users\olijw\miniconda3\Library\mingw-w64\bin;C:\Users\olijw\miniconda3\Library\usr\bin;C:\Users\olijw\miniconda3\Library\bin;C:\Users\olijw\miniconda3\Scripts;C:\Users\olijw\miniconda3\bin;C:\Users\olijw\miniconda3\envs\straditize\envs\straditize;C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Library\mingw-w64\bin;C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Library\usr\bin;C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Library\bin;C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\Scripts;C:\Users\olijw\miniconda3\envs\straditize\envs\straditize\bin;C:\Users\olijw\miniconda3\condabin;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0;C:\Windows\System32\OpenSSH;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Users\olijw\AppData\Local\Microsoft\WindowsApps;. PSMODULEPATH: C:\Program Files\WindowsPowerShell\Modules;C:\Windows\system32\WindowsPowerShell\v1.0\Modules REQUESTS_CA_BUNDLE: SSL_CERT_FILE: ```
``` (straditize) C:\Users\olijw>conda list # packages in environment at C:\Users\olijw\miniconda3\envs\straditize\envs\straditize: # # Name Version Build Channel alabaster 0.7.12 py_0 conda-forge babel 2.8.0 py_0 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 py_2 conda-forge backports.functools_lru_cache 1.6.1 py_0 conda-forge blas 1.0 mkl blosc 1.20.0 ha925a31_0 conda-forge brotli 1.0.9 ha925a31_0 conda-forge brotlipy 0.7.0 py37h4ab8f01_1000 conda-forge bzip2 1.0.8 he774522_3 conda-forge ca-certificates 2020.6.20 hecda079_0 conda-forge certifi 2020.6.20 py37hc8dfbb8_0 conda-forge cffi 1.14.1 py37h26f1ce3_0 conda-forge cftime 1.2.1 py37h44b1f71_0 conda-forge chardet 3.0.4 py37hc8dfbb8_1006 conda-forge charls 2.1.0 h33f27b4_2 conda-forge cloudpickle 1.6.0 py_0 conda-forge colorama 0.4.3 py_0 conda-forge cryptography 3.1 py37h26f1ce3_0 conda-forge curl 7.71.1 h4b64cdc_5 conda-forge cycler 0.10.0 py_2 conda-forge cytoolz 0.10.1 py37hfa6e2cd_0 conda-forge dask-core 2.25.0 py_0 conda-forge decorator 4.4.2 py_0 conda-forge docrep 0.3.0 pyh9f0ad1d_0 conda-forge docutils 0.16 py37hc8dfbb8_1 conda-forge et_xmlfile 1.0.1 py_1001 conda-forge fasteners 0.14.1 py_3 conda-forge freetype 2.10.2 hd328e21_0 conda-forge funcargparse 0.2.2 py_0 conda-forge giflib 5.2.1 h2fa13f4_2 conda-forge hdf4 4.2.13 hf8e6fe8_1003 conda-forge hdf5 1.10.6 nompi_he0bbb20_101 conda-forge icc_rt 2019.0.0 h0cc432a_1 icu 67.1 h33f27b4_0 conda-forge idna 2.10 pyh9f0ad1d_0 conda-forge imagecodecs 2020.5.30 py37h92c78e3_2 conda-forge imageio 2.9.0 py_0 conda-forge imagesize 1.2.0 py_0 conda-forge intel-openmp 2019.4 245 ipykernel 5.3.4 py37h5ca1d4c_0 conda-forge ipython 7.18.1 py37hc6149b9_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge jdcal 1.4.1 py_0 conda-forge jedi 0.17.2 py37hc8dfbb8_0 conda-forge jinja2 2.11.2 pyh9f0ad1d_0 conda-forge jpeg 9d he774522_0 conda-forge jupyter_client 6.1.7 py_0 conda-forge jupyter_core 4.6.3 py37hc8dfbb8_1 conda-forge jxrlib 1.1 hfa6e2cd_2 conda-forge kiwisolver 1.2.0 py37heaa310e_0 conda-forge krb5 1.17.1 hc04afaa_3 conda-forge lcms2 2.11 he1115b7_0 conda-forge lerc 2.2 ha925a31_0 conda-forge libaec 1.0.4 he025d50_1 conda-forge libblas 3.8.0 14_mkl conda-forge libcblas 3.8.0 14_mkl conda-forge libclang 10.0.1 default_hf44288c_1 conda-forge libcurl 7.71.1 h4b64cdc_5 conda-forge liblapack 3.8.0 14_mkl conda-forge libnetcdf 4.7.4 nompi_h256d12c_105 conda-forge libpng 1.6.37 ha81a0f5_2 conda-forge libsodium 1.0.17 h2fa13f4_0 conda-forge libssh2 1.9.0 hb06d900_5 conda-forge libtiff 4.1.0 h885aae3_6 conda-forge libwebp-base 1.1.0 hfa6e2cd_3 conda-forge libzopfli 1.0.3 ha925a31_0 conda-forge lz4-c 1.9.2 h62dcd97_2 conda-forge markupsafe 1.1.1 py37h8055547_1 conda-forge matplotlib-base 3.3.1 py37h35e8a6e_1 conda-forge mkl 2019.4 245 mkl-service 2.3.0 py37hfa6e2cd_0 conda-forge monotonic 1.5 py_0 conda-forge netcdf4 1.5.4 nompi_py37h71608f9_102 conda-forge networkx 2.5 py_0 conda-forge numpy 1.19.1 py37h7cee19a_2 conda-forge olefile 0.46 py_0 conda-forge openjpeg 2.3.1 h57dd2e7_3 conda-forge openpyxl 3.0.5 py_0 conda-forge openssl 1.1.1g he774522_1 conda-forge packaging 20.4 pyh9f0ad1d_0 conda-forge pandas 1.1.1 py37h1834ac0_0 conda-forge parso 0.7.1 pyh9f0ad1d_0 conda-forge pickleshare 0.7.5 py37hc8dfbb8_1001 conda-forge pillow 7.2.0 py37hc826c6e_1 conda-forge pip 20.2.2 py_0 conda-forge prompt-toolkit 3.0.7 py_0 conda-forge psy-simple 1.2.0 py37hc8dfbb8_1001 conda-forge psy-strat 0.1.1 py37_0 conda-forge psyplot 1.2.1 py37hc8dfbb8_2 conda-forge psyplot-gui 1.2.4 py37_0 conda-forge pycparser 2.20 pyh9f0ad1d_2 conda-forge pygments 2.6.1 py_0 conda-forge pyopenssl 19.1.0 py_1 conda-forge pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge pyqt 5.12.3 py37h6538335_1 conda-forge pyqt5-sip 4.19.18 pypi_0 pypi pyqtwebengine 5.12.1 pypi_0 pypi pysocks 1.7.1 py37hc8dfbb8_1 conda-forge python 3.7.8 h60c2a47_1_cpython conda-forge python-dateutil 2.8.1 py_0 conda-forge python_abi 3.7 1_cp37m conda-forge pytz 2020.1 pyh9f0ad1d_0 conda-forge pywavelets 1.1.1 py37h44b1f71_1 conda-forge pywin32 227 py37hfa6e2cd_0 conda-forge pyyaml 5.3.1 py37h8055547_0 conda-forge pyzmq 19.0.2 py37h453f00a_0 conda-forge qt 5.12.6 hb2cf2c5_0 conda-forge qtconsole 4.7.7 pyh9f0ad1d_0 conda-forge qtpy 1.9.0 py_0 conda-forge requests 2.24.0 pyh9f0ad1d_0 conda-forge scikit-image 0.17.2 py37h3bbf574_1 conda-forge scipy 1.5.2 py37h9439919_0 setuptools 49.6.0 py37hc8dfbb8_0 conda-forge six 1.15.0 pyh9f0ad1d_0 conda-forge snappy 1.1.8 ha925a31_3 conda-forge snowballstemmer 2.0.0 py_0 conda-forge sphinx 3.2.1 py_0 conda-forge sphinx_rtd_theme 0.5.0 pyh9f0ad1d_0 conda-forge sphinxcontrib-applehelp 1.0.2 py_0 conda-forge sphinxcontrib-devhelp 1.0.2 py_0 conda-forge sphinxcontrib-htmlhelp 1.0.3 py_0 conda-forge sphinxcontrib-jsmath 1.0.1 py_0 conda-forge sphinxcontrib-qthelp 1.0.3 py_0 conda-forge sphinxcontrib-serializinghtml 1.1.4 py_0 conda-forge sqlite 3.33.0 he774522_0 conda-forge straditize 0.1.3 py37_0 conda-forge tifffile 2020.9.3 py_0 conda-forge tk 8.6.10 he774522_0 conda-forge toolz 0.10.0 py_0 conda-forge tornado 6.0.4 py37hfa6e2cd_0 conda-forge traitlets 5.0.3 py_0 conda-forge urllib3 1.25.10 py_0 conda-forge vc 14.1 h869be7e_1 conda-forge vs2015_runtime 14.16.27012 h30e32a0_2 conda-forge wcwidth 0.2.5 pyh9f0ad1d_1 conda-forge wheel 0.35.1 pyh9f0ad1d_0 conda-forge win_inet_pton 1.1.0 py37_0 conda-forge wincertstore 0.2 py37_1003 conda-forge xarray 0.16.0 py_0 conda-forge xz 5.2.5 h62dcd97_1 conda-forge yaml 0.2.5 he774522_0 conda-forge zeromq 4.3.2 ha925a31_3 conda-forge zfp 0.5.5 ha925a31_1 conda-forge zlib 1.2.11 h62dcd97_1009 conda-forge zstd 1.4.5 h1f3a1b7_2 conda-forge ```
Chilipp commented 4 years ago

Hi @olijw! Thanks for raising the issue here and my apologies for the troubles you ran into. The issue comes from an incompatibility with the latest version of docrep and the latest release of psyplot. I am close to releasing a new release of psyplot but due to other things... :see_no_evil: Sorry.

Anyway, this should be easy to fix, just run

conda install -c conda-forge --override-channels docrep=0.2

after you ran conda activate straditize. There will be a new release of psyplot next week which should fix this issue.

Chilipp commented 4 years ago

ps, while this is certainly annoying, it doesn't feel like the weirdest error message I've had trying to use Straditize: my old laptop (Windows 8.1) would give me a pop-up error window saying "This Windows version (6.3.9600) does not support the required Bluetooth API. Consider updating to a more recent Windows (10.0.10586 or above)." Quite why Bluetooth was involved I have no idea..!

ok, this is really weird and certainly there is no bluetooth involved with straditize :sweat_smile: I can only imagine that this comes from the PyQt5 library and indeed, this seems to be a common problem. You could try the fix in https://github.com/GIS4WRF/gis4wrf/issues/103#issuecomment-575889035, maybe that helps?

olijw commented 4 years ago

Hi Philipp,

Thanks for getting back to me so quickly - it's great to be getting closer to using this tool! I tried your first solution (the docrep workaround) but while I installed it fine, calling 'straditize' led to a different series of warnings and errors:

``` (straditize) C:\Users\olijw>straditize C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psy_simple\plugin.py:806: MatplotlibDeprecationWarning: The validate_nseq_float function was deprecated in Matplotlib 3.3 and will be removed two minor releases later. None, try_and_error(validate_none, validate_nseq_float(2)), C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psy_simple\plugin.py:806: MatplotlibDeprecationWarning: The _make_nseq_validator function was deprecated in Matplotlib 3.3 and will be removed two minor releases later. None, try_and_error(validate_none, validate_nseq_float(2)), C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psy_simple\plugin.py:1013: MatplotlibDeprecationWarning: The validate_nseq_float function was deprecated in Matplotlib 3.3 and will be removed two minor releases later. 'texts.default_position': [(1., 1.), validate_nseq_float(2), C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psy_simple\plugin.py:1013: MatplotlibDeprecationWarning: The _make_nseq_validator function was deprecated in Matplotlib 3.3 and will be removed two minor releases later. 'texts.default_position': [(1., 1.), validate_nseq_float(2), C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psy_simple\plugin.py:70: MatplotlibDeprecationWarning: The validate_bool_maybe_none function was deprecated in Matplotlib 3.3 and will be removed two minor releases later. return func(value) WARNING:psyplot.warning:C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py:527: PsyPlotWarning: Trying to set 'plotter.simple.xtickprops' to {'major': {}, 'minor': {}} via the update method of RcParams which does not validate cleanly. self.update({key: val[0] for key, val in defaultParams.items() WARNING:psyplot.warning:C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py:527: PsyPlotWarning: Trying to set 'plotter.simple.ytickprops' to {'major': {}, 'minor': {}} via the update method of RcParams which does not validate cleanly. self.update({key: val[0] for key, val in defaultParams.items() C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py:430: MatplotlibDeprecationWarning: The validate_bool_maybe_none function was deprecated in Matplotlib 3.3 and will be removed two minor releases later. cval = self.validate[key](val) WARNING:psyplot.warning:C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py:527: PsyPlotWarning: Trying to set 'plotter.simple.xticks' to {'major': None, 'minor': None} via the update method of RcParams which does not validate cleanly. self.update({key: val[0] for key, val in defaultParams.items() WARNING:psyplot.warning:C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot\config\rcsetup.py:527: PsyPlotWarning: Trying to set 'plotter.simple.yticks' to {'major': None, 'minor': None} via the update method of RcParams which does not validate cleanly. self.update({key: val[0] for key, val in defaultParams.items() INFO:matplotlib.font_manager:Generating new fontManager, this may take some time... Attribute Qt::AA_UseSoftwareOpenGL must be set before QCoreApplication is created. Traceback (most recent call last): File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 535, in get value = obj._trait_values[self.name] KeyError: 'iopub_socket' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 535, in get value = obj._trait_values[self.name] KeyError: 'iopub_thread' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\olijw\miniconda3\envs\straditize\Scripts\straditize-script.py", line 10, in sys.exit(main()) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\straditize\__main__.py", line 180, in main parser.parse_known2func() File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\funcargparse\__init__.py", line 930, in parse_known2func return func(**kws), remainder File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\straditize\__main__.py", line 70, in start_app mainwindow = start_app(exec_=False, callback='', **kwargs) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot_gui\__init__.py", line 226, in start_app mainwindow = MainWindow.run(fnames, project, engine, plot_method, name, File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot_gui\main.py", line 972, in run mainwindow = cls(show=show) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot_gui\main.py", line 144, in __init__ self.console = ConsoleWidget(self) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\psyplot_gui\console.py", line 105, in __init__ kernel_manager.start_kernel(show_banner=False) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\inprocess\manager.py", line 46, in start_kernel self.kernel = InProcessKernel(parent=self, session=self.session) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\inprocess\ipkernel.py", line 72, in __init__ super(InProcessKernel, self).__init__(**traits) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\ipkernel.py", line 71, in __init__ self.shell.displayhook.pub_socket = self.iopub_socket File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 575, in __get__ return self.get(obj, cls) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 538, in get default = obj.trait_defaults(self.name) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 1577, in trait_defaults return self._get_trait_default_generator(names[0])(self) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 975, in __call__ return self.func(*args, **kwargs) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\inprocess\ipkernel.py", line 67, in _default_iopub_socket return self.iopub_thread.background_socket File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 575, in __get__ return self.get(obj, cls) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 538, in get default = obj.trait_defaults(self.name) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 1577, in trait_defaults return self._get_trait_default_generator(names[0])(self) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\traitlets\traitlets.py", line 975, in __call__ return self.func(*args, **kwargs) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\inprocess\ipkernel.py", line 59, in _default_iopub_thread thread = IOPubThread(self._underlying_iopub_socket) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\iostream.py", line 71, in __init__ self._setup_event_pipe() File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\ipykernel\iostream.py", line 90, in _setup_event_pipe self._event_puller = ZMQStream(pipe_in, self.io_loop) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\zmq\eventloop\zmqstream.py", line 127, in __init__ self._init_io_state() File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\zmq\eventloop\zmqstream.py", line 552, in _init_io_state self.io_loop.add_handler(self.socket, self._handle_events, self.io_loop.READ) File "C:\Users\olijw\miniconda3\envs\straditize\lib\site-packages\tornado\platform\asyncio.py", line 100, in add_handler self.asyncio_loop.add_reader(fd, self._handle_events, fd, IOLoop.READ) File "C:\Users\olijw\miniconda3\envs\straditize\lib\asyncio\events.py", line 501, in add_reader raise NotImplementedError NotImplementedError ```

Any thoughts?

Thanks,

Oli

Chilipp commented 4 years ago

Hi @olijw! Thanks again for letting me know. Might be related to https://github.com/ipython/ipykernel/issues/468, not sure, I'll have to try it for myself (usually I am not working on windows), but I can't do this before Monday, sorry

olijw commented 4 years ago

Not to worry, there's no real rush! Have a good weekend and I look forward to revisiting this at some point in the coming week.

On Sat, 5 Sep 2020 at 14:07, Philipp S. Sommer notifications@github.com wrote:

Hi @olijw https://github.com/olijw! Thanks again for letting me know. Might be related to ipython/ipykernel#468 https://github.com/ipython/ipykernel/issues/468, not sure, I'll have to try it for myself (usually I am not working on windows), but I can't do this before Monday, sorry

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Chilipp/straditize/issues/19#issuecomment-687608851, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQ4ASBL5G7YKTCIOI52RFLTSEIZ25ANCNFSM4QZTVPFQ .

Chilipp commented 4 years ago

hey @olijw! Sorry for coming back to you so late! this is just to let you know that I am still working on it. For me, the GUI starts, but the help explorer does not load properly on Windows. I need to check what the issue is here. On Wednesday I should have time for it, but this has a high priority

olijw commented 4 years ago

Hi @Chilipp, thanks for continuing to work on this! I hope you’ve been making headway with it all, and I really look forward to being able to try out the program when it’s all working as it should :)

Chilipp commented 4 years ago

Hi @olijw, the installation should work now via conda create -n straditize -c psyplot/label/master -c conda-forge straditize . Could you try this please? My apologies for the delay.

olijw commented 4 years ago

Hi Philipp, this does indeed work! Thanks very much for your hard work sorting it out, and for putting together such a great tool - I'm already enjoying working out how to use it! All the best, Oli