'Parameters Error? Processes Break Down' Error

ChnMasterOG / KmerGO

KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput sequencing datasets.

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'Parameters Error? Processes Break Down' Error #4

Closed erin-thei closed 1 year ago

erin-thei commented 1 year ago

Hello,

Thank you for this tool. I have encountered an issue running it on assembled genomes. The first step finishes, and the second step (Kmer union) begins, but almost immediately returns the status as -9, with the error "Parameters error? Processes break down."

The test files run successfully so I'm not sure what I am doing wrong.

Thanks in advance for your help!

ChnMasterOG commented 1 year ago

Wrong trait informations(traits do not correspond to file names) will cause this error. Please check it or show me the trait_information csv file.

erin-thei commented 1 year ago

Thanks for your response! Below is what the trait information csv file looks like:

ChnMasterOG commented 1 year ago

Thank you. It's a wrong format csv file for KmerGO1. You can remove all ".fasta" suffixes (refer to the format in README.md) and try again.

erin-thei commented 1 year ago

Awesome, got it to work. Thanks for your help!

ChnMasterOG commented 1 year ago

You are welcome.