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Chris7 / pyquant

Platform independent command line tool for analysis of mass spectrometry data.
https://chris7.github.io/pyquant/
MIT License
15 stars 6 forks source link

Problem with PyQuant #37

Closed emassign closed 4 years ago

emassign commented 5 years ago

Capture-error

Dear Chris7, I am running pyQuant using the code:

pyQuant --tsv evidence.txt --label-method K8R10 --maxquant --html

However I am getting the the error message that I have attached. Could you please help me?

Thanks in advance, Enrico

Chris7 commented 5 years ago

How are you running pyquant (docker or a system install, and if so, what version?)?

I have a release coming up that changes a few things with how Maxquant files are being processed that may address this. But it also may be a pandas version, where the way I was indexing previously was acceptable but is now not. If possible, could I get your evidence.txt file and the results of pip freeze if you are running it on your system?

emassign commented 5 years ago

Dear Chris7, I installed pyQuant in a conda environment (OS of the machine is Linux). I am attaching the results of pip freeze: pip_freeze.txt

Do you also need the input files? I could not attach them because they are too big, so I put them on wetransfer. here's the link to download them: https://we.tl/t-ues5gbiFoc

Thank you, Enrico

Chris7 commented 5 years ago

This looks to be fixed in the current branch of pyquant. I am having some issues with the machine that builds on windows (app-veyor) so I need to get that fixed to release an official windows version.

Chris7 commented 4 years ago

There is a windows test release, that can be installed via pip install pyquant==0.3.0rc0

Chris7 commented 4 years ago

Feel free to reopen if the latest does not resolve this.