Open QianhuiXu opened 2 years ago
Hello,
INTEGRATE is a wonderful tool！ I ran into an issue with running example.
My command : /home/shpc_100668/integrate/INTEGRATE_0_2_6/INTEGRATE-build/bin/Integrate fusion reference.fasta annot.ensembl.txt ./bwts accepted_hits.bam unmapped.bam
Error: INTEGRATE version 0.2.6 Loading reference... 6 1 47000000 19 47000001 87000000 0.13232 seconds
Loading genes... 16867 transcripts loaded. 0.528388 seconds
Loading BWTs for chromosomes... 1.83484 seconds
Handling RNA data...
Insert sizes and stds tested by different RGs: 2891354555 247 1500
Getting graph by encompassing RNA reads... This graph has 42 vertexes and 34 edges. 4.66594 seconds
Reducing Graph by removing encompassing pair with a hit in one gene mapped in BAM ... This graph has 34 vertexes and 27 edges. 0.984641 seconds
Getting BWTs for genes in the graph... Segmentation fault (core dumped)
I'm really at a loss as to how to proceed, and any guidance would be much appreciated! Thank you for your kind help!
Hello,
INTEGRATE is a wonderful tool！ I ran into an issue with running example.
My command : /home/shpc_100668/integrate/INTEGRATE_0_2_6/INTEGRATE-build/bin/Integrate fusion reference.fasta annot.ensembl.txt ./bwts accepted_hits.bam unmapped.bam
Error: INTEGRATE version 0.2.6 Loading reference... 6 1 47000000 19 47000001 87000000 0.13232 seconds
Loading genes... 16867 transcripts loaded. 0.528388 seconds
Loading BWTs for chromosomes... 1.83484 seconds
Handling RNA data...
Insert sizes and stds tested by different RGs: 2891354555 247 1500
Getting graph by encompassing RNA reads... This graph has 42 vertexes and 34 edges. 4.66594 seconds
Reducing Graph by removing encompassing pair with a hit in one gene mapped in BAM ... This graph has 34 vertexes and 27 edges. 0.984641 seconds
Getting BWTs for genes in the graph... Segmentation fault (core dumped)
I'm really at a loss as to how to proceed, and any guidance would be much appreciated! Thank you for your kind help!