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Christensen-Lab-Dartmouth / MethylNet

Modular framework for deep learning predictions on methylation data.
https://christensen-lab-dartmouth.github.io/MethylNet/
MIT License
51 stars 11 forks source link

CVAE is missed? #14

Closed GillianGrayson closed 3 years ago

GillianGrayson commented 3 years ago

Hi! Could you please help me to find CVAE class, which you used in this line:

https://github.com/Christensen-Lab-Dartmouth/MethylNet/blob/674506b6fe346813791e424ea049bbb2431c982c/methylnet/embedding.py#L67

jlevy44 commented 3 years ago

Hi @GillianGrayson we ended up deprecating the CVAE as the application of a convolution here may not be completely sensible in its current form. I will add a NotImplementedError here. Alternatively, feel free to check out some of the neural network structures at https://github.com/Christensen-Lab-Dartmouth/MethylCapsNet . Additionally, https://www.nature.com/articles/s42256-021-00325-y is an interesting modeling approach.

GillianGrayson commented 3 years ago

Thank you! I will close this issue

jlevy44 commented 3 years ago

No problem, feel free to open if you want me to add the NotImplementedError.