Access to train/val/test pkl files from the wiki?

Christensen-Lab-Dartmouth / MethylNet

Modular framework for deep learning predictions on methylation data.

https://christensen-lab-dartmouth.github.io/MethylNet/

MIT License

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Access to train/val/test pkl files from the wiki? #16

Open ofsolomon opened 2 years ago

ofsolomon commented 2 years ago

Hello!

I have my own dataset that I'm trying to run through methylnet, but I'm running into issues. As a way to debug, I would love to run the train/val/test pkls used in the wiki (sample dataset GSE87571) for the age prediction analysis so I can ensure I have methylnet installed correctly.

Would you be able to post those pkls for download? I know these can be generated from PyMethylProcess, but I'm worried I might create bugs if I run it myself.

Thanks!

jlevy44 commented 2 years ago

Hi @ofsolomon is this what you are looking for? https://github.com/Christensen-Lab-Dartmouth/MethylNet/tree/master/test_data https://codeocean.com/capsule/5473199/tree/v1