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ChristofferFlensburg / superFreq

Analysis pipeline for cancer sequencing data
MIT License
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Is it possible to track which subclones contain a specific genetic mutation in a superFreq riverplot? #111

Open km-2021 opened 1 year ago

km-2021 commented 1 year ago

Is it possible to track which subclones contain a specific genetic mutation in a superFreq riverplot?

I am currently using superFreq to analyze a dataset of cancer genomes. I am interested in tracking the evolution of a specific genetic mutation over time. I would like to be able to see which subclones contain the mutation at each time point.

Is there a way to do this in superFreq?

ChristofferFlensburg commented 1 year ago

The most important mutations are shown in the plot, and there is an .xls next to the river plot with data on all assigned mutations. Note that not all mutations are assigned to a clone though.