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ChristophKirst / ClearMap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
http://christophkirst.github.io/ClearMap/build/html/index.html
GNU General Public License v3.0
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iDISCO Python Module #2

Closed pforai closed 8 years ago

pforai commented 8 years ago

Hi guys!

I'm tripping over a non existing iDISCO python module that needs to be imported in one of the files of the test suite. Can't find anything python related to iDISCO. Any hints? I'm running master:

>>> print ClearMap.__version__
0.9.2
ChristophKirst commented 8 years ago

Hi,

can you specify this more concretely? What command & routines do you use to get the error message?

C.

pforai commented 8 years ago

I was trying to run the test suite within the repo here.

ChristophKirst commented 8 years ago

You are right, some of the test routines in the Test directory are not updated to the new name ClearMap naming, i look into this and/or will simply remove some of the older outdated test code. It should not affect the main functionality of the program at all. Most modules have their own test code under the test() routine which should work.

pforai commented 8 years ago

The test functions import from the iDISCO namespace as well. It's not a problem per se, but it would have been fine to check if our install is doing fine or if we screwed up somewhere.

ChristophKirst commented 8 years ago

Good to know, thanks for pointing it out ! At some point we changed the software name from iDISCO to ClearMap to separate the experimental protocol from the software that in principle could be used with a different clearing technique etc. I probably forgot to clean up / update some of the test routines and the Test folder after the name change. I will do in the next few days, the code should run though independent of this though.