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ChristophKirst / ClearMap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
http://christophkirst.github.io/ClearMap/build/html/index.html
GNU General Public License v3.0
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Anterior blob/wall #23

Closed sronilsson closed 5 years ago

sronilsson commented 5 years ago

I ran the code on the haloperidol/saline hemispheres from the website, I consistently get this wall thing at the most anterior part. Has anyone seen something like this and would know what it is/how to get rid of it? I tried to remove anterior slices from the atlas template but it didnt help.

capturee

sronilsson commented 5 years ago

Turned out I needed to crop the raw stack.... croppeasd