TIFFReadDirectory: Warning, Unknown field with tag 50838 (0xc696) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 50839 (0xc697) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 50838 (0xc696) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 50839 (0xc697) encountered.
Additionally, while the ClearMap seems to run, it's not outputting any heatmap or points_voxelized tif file. The program stops like this:
Reading the elastix parameters from file ...
Calling all ReadFromFile()'s took 0.012353 s
Transforming points ...
The transform is evaluated on some points, specified in the input point file.
Reading input point file: /tmp/elastix_input.txt
Input points are specified as image indices.
Number of specified input points: 1159
The input points are transformed.
The transformed points are saved in: /tmp/elastix_output/outputpoints.txt
Transforming points done, it took 0.01s
Compute determinant of spatial Jacobian ...
The command-line option "-jac" is not used, so no det(dT/dx) computed.
Computing determinant of spatial Jacobian done, it took 0.00s
Compute spatial Jacobian (full matrix) ...
The command-line option "-jacmat" is not used, so no dT/dx computed.
Computing spatial Jacobian done, it took 0.00s
transformix has finished at Fri Aug 2 12:29:58 2019.
Total time elapsed: 0.1s.
Processed 0/1159
Processed 0/1159
Process finished with exit code 0
I'm not sure if the TIFFReadDirectory warnings are leading to the problem above that no data is being processed in transformix - any insight would be helpful! Thank you
I'm getting a set of warnings through Elastix:
TIFFReadDirectory: Warning, Unknown field with tag 50838 (0xc696) encountered. TIFFReadDirectory: Warning, Unknown field with tag 50839 (0xc697) encountered. TIFFReadDirectory: Warning, Unknown field with tag 50838 (0xc696) encountered. TIFFReadDirectory: Warning, Unknown field with tag 50839 (0xc697) encountered.
Additionally, while the ClearMap seems to run, it's not outputting any heatmap or points_voxelized tif file. The program stops like this:
Reading the elastix parameters from file ...
Calling all ReadFromFile()'s took 0.012353 s Transforming points ... The transform is evaluated on some points, specified in the input point file. Reading input point file: /tmp/elastix_input.txt Input points are specified as image indices. Number of specified input points: 1159 The input points are transformed. The transformed points are saved in: /tmp/elastix_output/outputpoints.txt Transforming points done, it took 0.01s Compute determinant of spatial Jacobian ... The command-line option "-jac" is not used, so no det(dT/dx) computed. Computing determinant of spatial Jacobian done, it took 0.00s Compute spatial Jacobian (full matrix) ... The command-line option "-jacmat" is not used, so no dT/dx computed. Computing spatial Jacobian done, it took 0.00s
transformix has finished at Fri Aug 2 12:29:58 2019. Total time elapsed: 0.1s.
Processed 0/1159
Processed 0/1159
Process finished with exit code 0
I'm not sure if the TIFFReadDirectory warnings are leading to the problem above that no data is being processed in transformix - any insight would be helpful! Thank you