use only one genome - Githubissues

ChristopherBarrington / scamp

single cell analysis and more pipeline

https://christopherbarrington.github.io/scamp/

0 stars 0 forks source link

use only one genome #100

Closed ChristopherBarrington closed 11 months ago

ChristopherBarrington commented 11 months ago

simplify by using only one genome reference.

an _genome stanza would much nicer

[x] guess parameters script
[x] genome preparation workflow
[x] quantification cell ranger workflow
[x] quantification cell ranger arc workflow
[x] prepare seurat object cell ranger workflow
[x] prepare seurat object cell ranger arc workflow
[x] prepare parameters utility
[x] documentation
[x] assets example parameters