issues
search
ChristopherBarrington
/
scamp
single cell analysis and more pipeline
https://christopherbarrington.github.io/scamp/
0
stars
0
forks
source link
fix cell ranger mkref editing gtf
#120
Closed
ChristopherBarrington
closed
9 months ago
ChristopherBarrington
commented
9 months ago
used
sed
to modify gtf in-place but this would edit a shared or output file
redirect
sed
output to
parsed_features.gtf
and pass that file to cell ranger
any modifications can be applied to
parsed_features.gtf
affected both cell ranger and cell ranger arc mkref modules
sed
to modify gtf in-place but this would edit a shared or output filesed
output toparsed_features.gtf
and pass that file to cell rangerparsed_features.gtf