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ChristopherBarrington / scamp

single cell analysis and more pipeline
https://christopherbarrington.github.io/scamp/
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provide output parameters with new fields #49

Open ChristopherBarrington opened 1 year ago

ChristopherBarrington commented 1 year ago

an output could be a parameters yaml file with additional fields added - eg seurat path so that the pipeline can be restarted from here rather than the cache in the longer-term

ChristopherBarrington commented 1 year ago

not easy I don't think

ChristopherBarrington commented 1 year ago

not possible from within nextflow - the parameters object will have references to the work dir objects not the published ones.

maybe include a --results-dir option to guess-scamp-file.py instead