issues
search
ChristopherBarrington
/
scamp
single cell analysis and more pipeline
https://christopherbarrington.github.io/scamp/
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
include website
#43
ChristopherBarrington
closed
1 year ago
0
make config files for cell ranger dataset-specific
#42
ChristopherBarrington
closed
1 year ago
1
value channels instead of mapped channels
#41
ChristopherBarrington
closed
1 year ago
0
linkout shortcode and partial duplicated
#40
ChristopherBarrington
closed
1 year ago
1
move feature types parameters
#39
ChristopherBarrington
closed
1 year ago
0
reorganise config files
#38
ChristopherBarrington
closed
1 year ago
0
update website from silver sodium
#37
ChristopherBarrington
closed
1 year ago
0
Restructured params
#36
ChristopherBarrington
closed
1 year ago
0
use fair rather than combine and filter
#35
ChristopherBarrington
closed
1 year ago
1
strip.suffix optional
#34
ChristopherBarrington
closed
1 year ago
0
add documentation for utility functions
#33
ChristopherBarrington
closed
1 year ago
0
shepherd tours could be tidier
#32
ChristopherBarrington
closed
12 months ago
3
cell ranger report titles
#31
ChristopherBarrington
closed
1 year ago
0
make scrnaseq and snrna+atac workflows
#30
ChristopherBarrington
opened
1 year ago
0
move genome functions out of subworkflows
#29
ChristopherBarrington
closed
8 months ago
0
subset cell set using barcode list
#28
ChristopherBarrington
opened
1 year ago
0
make shell scripts more readable
#27
ChristopherBarrington
closed
1 year ago
0
move shared parameters into pipeline stanzas
#26
ChristopherBarrington
closed
1 year ago
1
Consistent dataset derived key names
#24
ChristopherBarrington
closed
1 year ago
0
Consistent dataset derived key names
#23
ChristopherBarrington
closed
1 year ago
0
Metadata invalidates cache??
#22
ChristopherBarrington
closed
1 year ago
3
move `record_package_versions()`
#21
ChristopherBarrington
closed
1 year ago
0
decide what to do with task.yaml
#20
ChristopherBarrington
closed
1 year ago
0
new gtf files use gene_type not gene_biotype
#19
ChristopherBarrington
closed
1 year ago
1
download genome files
#17
ChristopherBarrington
closed
8 months ago
0
make it args, not metadata
#16
ChristopherBarrington
closed
1 year ago
1
Update r scripts to not use uid!
#15
ChristopherBarrington
closed
1 year ago
0
update cell ranger arc workflows and modules with metadata channel
#14
ChristopherBarrington
closed
1 year ago
0
move cr arc seurat to new subworkflow
#13
ChristopherBarrington
closed
1 year ago
0
new assays feature names
#12
ChristopherBarrington
closed
1 year ago
0
put r functions into (scamper) package
#11
ChristopherBarrington
closed
1 year ago
0
consistent dataset-derived key names
#10
ChristopherBarrington
closed
1 year ago
2
containerisation
#9
ChristopherBarrington
opened
1 year ago
3
parameter stanzas always have to include something
#8
ChristopherBarrington
closed
11 months ago
1
ability to push to github
#7
ChristopherBarrington
opened
1 year ago
0
make reports for tasks/workflows
#6
ChristopherBarrington
opened
1 year ago
1
document parameters for tasks
#5
ChristopherBarrington
closed
1 year ago
0
write documentation yaml files
#4
ChristopherBarrington
closed
1 year ago
1
use template scripts
#3
ChristopherBarrington
closed
1 year ago
0
complete the load cell ranger arc Seurat function
#2
ChristopherBarrington
closed
1 year ago
0
organise utilities module using templates
#1
ChristopherBarrington
closed
1 year ago
1
Previous