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ChristopherWilks / megadepth

BigWig and BAM utilities
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Error installing Megadepth #13

Closed shmenolin closed 2 years ago

shmenolin commented 2 years ago

I got the following error while installing Megadepth. Could you please help me solve these issues?

Thank you

> library(megadepth)
> megadepth_cmd()
Error: megadepth not found. You can install it via megadepth::install_megadepth()
> megadepth::install_megadepth()
Error in file(con, "r") : 
  cannot open the connection to 'https://github.com/ChristopherWilks/megadepth/releases/latest'
In addition: Warning message:
In file(con, "r") :
  URL 'https://github.com/ChristopherWilks/megadepth/releases/latest': Timeout of 60 seconds was reached
ChristopherWilks commented 2 years ago

Hi @shmenolin, Thanks for the detailed issue report.

I just tried this myself (via sudo on a machine I have R on) and it worked for me so I suspect it's either a transient connection issue with github or an issue with your specific system/network. So I suggest you try it again and/or try a different system if you have one.

I don't maintain the R megadepth package, just the binary here, so for further issues with the R megadepth package I'd suggest you'd post to bioconductor support site as stated here: https://bioconductor.org/packages/release/bioc/vignettes/megadepth/inst/doc/megadepth.html#13_Asking_for_help

Thanks, Chris