Closed PhaniGaddipati closed 8 years ago
Query: http://stingray.cs.jhu.edu:8090/srav1/annotations?regions=eml4
http://stingray.cs.jhu.edu:8090/srav1/annotations?regions=eml4
Output: DataSource:Type reference annotation_source feature_type start end unused strand unused attributes
DataSource:Type reference annotation_source feature_type start end unused strand unused attributes
Mixed:G chr2 GC,ES,RG transcript 42370378 42397371 . - . transcript_id "ENST00000422013.2,ENST00000422013,NR_110584";cds_span "NA";exons "42370378-42370484,42374791-42374980,42377075-42377172,42397110-42397371";
...
Query: http://stingray.cs.jhu.edu:8090/srav1/annotations?regions=eml4&limit=50
http://stingray.cs.jhu.edu:8090/srav1/annotations?regions=eml4&limit=50
Mixed:G chr2 ES,GC transcript 42396752 42558014 100024 + . transcript_id "ENST00000401738,ENST00000401738.3";cds_span "42396752-42557344";exons "42396601-42396776,42472645-42472827,42483641-42483770,42488261-42488434,42490318-42490446,42491846-42491871,42492059-42492091,42507990-42508113,42509963-42510112,42511774-42511843,42513409-42513519,42515367-42515462,42522265-42522399,42522521-42522656,42528381-42528532,42530244-42530369,42530455-42530586,42531624-42531691,42543102-42543190,42544567-42544664,42552607-42552694,42553294-42553392,42556026-42556156,42556874-42558014";
Mixed:G exons "42370378-42370484,42374791-42374980,42377075-42377172,42397110-42397371"
There are extra malformed lines when the &limit portion is included - the output stays the same (same # of bad lines) as long as limit > # models.
looks like I left in a debug statement in the limit mini-script I had; this should be fixed now.
reopening to be closed via commit
Query:
http://stingray.cs.jhu.edu:8090/srav1/annotations?regions=eml4
Output:
DataSource:Type reference annotation_source feature_type start end unused strand unused attributes
Mixed:G chr2 GC,ES,RG transcript 42370378 42397371 . - . transcript_id "ENST00000422013.2,ENST00000422013,NR_110584";cds_span "NA";exons "42370378-42370484,42374791-42374980,42377075-42377172,42397110-42397371";
...
Query:
http://stingray.cs.jhu.edu:8090/srav1/annotations?regions=eml4&limit=50
Output:
DataSource:Type reference annotation_source feature_type start end unused strand unused attributes
Mixed:G chr2 ES,GC transcript 42396752 42558014 100024 + . transcript_id "ENST00000401738,ENST00000401738.3";cds_span "42396752-42557344";exons "42396601-42396776,42472645-42472827,42483641-42483770,42488261-42488434,42490318-42490446,42491846-42491871,42492059-42492091,42507990-42508113,42509963-42510112,42511774-42511843,42513409-42513519,42515367-42515462,42522265-42522399,42522521-42522656,42528381-42528532,42530244-42530369,42530455-42530586,42531624-42531691,42543102-42543190,42544567-42544664,42552607-42552694,42553294-42553392,42556026-42556156,42556874-42558014";
...
Mixed:G exons "42370378-42370484,42374791-42374980,42377075-42377172,42397110-42397371"
...
There are extra malformed lines when the &limit portion is included - the output stays the same (same # of bad lines) as long as limit > # models.