search

Cibiv / IQ-TREE

Efficient phylogenomic software by maximum likelihood
http://www.iqtree.org
GNU General Public License v2.0
187 stars 44 forks source link

How to solve iqtree crash #233

Open kopelol opened 2 years ago

kopelol commented 2 years ago

Hi, I encountered following ERROR.

ERROR: phylokernelnonrev.h:1461: double PhyloTree::computeNonrevLikelihoodBranchSIMD(PhyloNeighbor, PhyloNode) [with VectorClass = Vec4d; bool SAFE_NUMERIC = false; int nstates = 4; bool FMA = true]: Assertion `all_prob_const < 1.0 && all_prob_const >= 0.0' failed. ERROR: STACK TRACE FOR DEBUGGING: ERROR: 1 funcAbort() ERROR: 2 () ERROR: 3 gsignal() ERROR: 4 abort() ERROR: 5 () ERROR: 6 double PhyloTree::computeNonrevLikelihoodBranchSIMD<Vec4d, false, 4, true>(PhyloNeighbor, PhyloNode) ERROR: 7 PhyloTree::optimizeAllBranches(int, double, int) ERROR: 8 PhyloTree::testNumThreads() ERROR: 9 PhyloTree::ensureNumberOfThreadsIsSet(Params) ERROR: 10 CandidateModel::evaluate[abi:cxx11](Params&, ModelCheckpoint&, ModelCheckpoint&, ModelsBlock, int&, int) ERROR: 11 CandidateModelSet::test(Params&, PhyloTree, ModelCheckpoint&, ModelsBlock, int, int, std::cxx11::basic_string<char, std::char_traits, std::allocator >, std::cxx11::basic_string<char, std::char_traits, std::allocator >, bool) ERROR: 12 runModelFinder(Params&, IQTree&, ModelCheckpoint&) ERROR: 13 runPhyloAnalysis(Params&, Checkpoint, IQTree&, Alignment&) ERROR: 14 runPhyloAnalysis(Params&, Checkpoint) ERROR: 15 main() ERROR: 16 __libc_start_main() ERROR: 17 () ERROR: ERROR: IQ-TREE CRASHES WITH SIGNAL ABORTED ERROR: For bug report please send to developers: ERROR: Log file: core.aln2.log ERROR: Alignment files (if possible)

It might be due to my alignment length(It's core gene alignment of bacteria species).
Should I add "-t PARS" option?

Best regards,

Caiyulu-818 commented 1 year ago

Hi, have you ever solved this problem?