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Cibiv / ModelRevelator

MIT License
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multiple alignments #1

Open Myoxanthus opened 5 months ago

Myoxanthus commented 5 months ago

Hi, I am trying to run it in a directory with multiple alignments but got this error when using *.phy in the path, even with the example files

modelrevelator_cli.py: error: unrecognized arguments: /prueba_modelrevelator/64Taxa_GTR+G_alpha0.3_10000bp.phy /prueba_modelrevelator/64Taxa_HKY_1000bp.phy /prueba_modelrevelator/8Taxa_JC+G_alpha0.3_1000bp.phy

if I use only the name of one file it runs fine.

sebotic commented 5 months ago

I just tested it, seems to work fine for me. Can you post the exact command you're using? The --alignments option just accepts one alignment path, with or without the placeholders * and ?.

I used:

python modelrevelator_cli.py --alignments ../example_alignments/*.phy