Cirad-ASTRE / mapMCDA

Produce an epidemiological risk map by weighting multiple risk factors
https://umr-astre.pages.mia.inra.fr/mapMCDA/
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Save a log/report with inputs and parameters used in the analysis #25

Open famuvie opened 5 years ago

famuvie commented 5 years ago

It would be useful to display in console the R code generated in RShiny interface and/or to produce a log report, ie. with layers considered, link used for standardisation, weights computed for each risk factors, consistency ratio, destination references to produced files (for archiving or further modifications)

Feature requested by @vporphyre in #19

famuvie commented 5 years ago

Absolutely. This is very important for reproducibility.

I would do this by allowing to save the full R-script that reproduces the analysis (loads layers, scales, weights). This would serve both as a report of what has been done, but also as a template for further modifications.

How does it sound to you?

vporphyre commented 5 years ago

sound good may be you could also add a button at this end of the process to ask for this full R-script or not. it may avoid misunderstandings with non-expert users seeing automatic scripts appeared in the R console...

V

Le mer. 10 avr. 2019 à 15:43, Facundo Muñoz notifications@github.com a écrit :

Absolutely. This is very important for reproducibility.

I would do this by allowing to save the full R-script that reproduces the analysis (loads layers, scales, weights). This would serve both as a report of what has been done, but also as a template for further modifications.

How does it sounds to you?

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famuvie commented 5 years ago

I was thinking of a button to export the R script, or maybe some Log tab with a textbox with the code.

vporphyre commented 5 years ago

perfecto!

Le mer. 10 avr. 2019 à 16:50, Facundo Muñoz notifications@github.com a écrit :

I was thinking of a button to export the R script, or maybe some Log tab with a textbox with the code.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Cirad-ASTRE/mapMCDA/issues/25#issuecomment-481677030, or mute the thread https://github.com/notifications/unsubscribe-auth/Au3qei8TxDKKMYH7QRSw6TZC8Gs_I8bFks5vfd35gaJpZM4cmuSj .

-- Vincent PORPHYRE CIRAD Coordinateur du réseau QualiREG en Océan Indien http://www.qualireg.org


CIRAD - UMR 112 Systèmes d'élevage en milieux méditerranéens et tropicaux Tel. +262.2.62.49.92.55 (office) Fax. +262.2.62.49.92.95 Secr. +262.2.62.49.92.02 Mail. vincent.porphyre@cirad.fr Website. http://pigtrop.cirad.fr

CIRAD - Station Ligne-Paradis 7 chemin de l'IRAT, F-97410 Saint Pierre Réunion - FRANCE (DOM) Website UPR. http://www.cirad.fr/ur/systemes_elevage Perso page. http://agents.cirad.fr/index.php/Vincent+PORPHYRE

Trouver un projet ou un futur partenaire scientifique en Océan Indien sur www.agro-oi.org

Pensez à l'environnement : n'imprimez pas ce courriel ! Adopt the eco-attitude, Think Environment before printing

http://www.qualireg.org