CodecZlib had build errors.

[trecakov]

julia> Pkg.test("Circuitscape") INFO: Testing Circuitscape ERROR: LoadError: CodecZlib.jl is not installed properly, run Pkg.build("CodecZlib") and restart Julia. Stacktrace: [1] error(::String) at ./error.jl:21 [2] include_from_node1(::String) at ./loading.jl:576 [3] include(::String) at ./sysimg.jl:14 [4] anonymous at ./:2 while loading /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/pkg/v0.6/CodecZlib/src/CodecZlib.jl, in expression starting on line 42 ERROR: LoadError: Failed to precompile CodecZlib to /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/cache/CodecZlib.ji. Stacktrace: [1] compilecache(::String) at ./loading.jl:710 [2] _require(::Symbol) at ./loading.jl:463 [3] require(::Symbol) at ./loading.jl:405 [4] include_from_node1(::String) at ./loading.jl:576 [5] include(::String) at ./sysimg.jl:14 [6] anonymous at ./:2 while loading /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/pkg/v0.6/LightGraphs/src/LightGraphs.jl, in expression starting on line 4 ERROR: LoadError: LoadError: LoadError: Failed to precompile LightGraphs to /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/cache/LightGraphs.ji. Stacktrace: [1] compilecache(::String) at ./loading.jl:710 [2] _require(::Symbol) at ./loading.jl:497 [3] require(::Symbol) at ./loading.jl:405 [4] include_from_node1(::String) at ./loading.jl:576 [5] eval(::Module, ::Any) at ./boot.jl:235 [6] _require(::Symbol) at ./loading.jl:490 [7] require(::Symbol) at ./loading.jl:405 [8] include_from_node1(::String) at ./loading.jl:576 while loading /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/pkg/v0.6/SimpleWeightedGraphs/src/SimpleWeightedGraphs.jl, in expression starting on line 3 while loading /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/pkg/v0.6/Circuitscape/src/Circuitscape.jl, in expression starting on line 3 while loading /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/pkg/v0.6/Circuitscape/test/runtests.jl, in expression starting on line 1 ============================[ ERROR: Circuitscape ]=============================

failed process: Process(/software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/bin/julia -Cnative -J/software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /software/spack/spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/julia-0.6.2-uwymgoyn5twl2vsoalaxdkwxxh6ujdy3/var/julia/pkg/v0.6/Circuitscape/test/runtests.jl, ProcessExited(1)) [1]

================================================================================ ERROR: Circuitscape had test errors

I have searched for the solution, however, there are none for linux. Any suggestions are appreciated.

Thanks

[ranjanan]

@trecakov could you tell me if running Pkg.build("CodecZlib") fails, and if so, paste the error message here?

[trecakov]

@ranjanan CodezZlib, failed... It couldnt download the file from the url, so I downloaded it manually and installed it. It fixes the problem. You can close this.

[ViralBShah]

If you could share the exact error message, we can try to get it fixed upstream.

[trecakov]

It was something like this:

INFO: Building CodecZlib
Info: Downloading https://github.com/bicycle1885/ZlibBuilder/releases/download/v1.0.0/Zlib.x86_64-linux-gnu.tar.gz to /raid/home/thibaut/.julia/v0.6/CodecZlib/deps/usr/downloads/Zlib.x86_64-linux-gnu.tar.gz...
[16:28:38] curl: (48) An unknown option was passed in to libcurl
==========================================================================[ ERROR: CodecZlib ]==========================================================================

LoadError: Could not download https://github.com/bicycle1885/ZlibBuilder/releases/download/v1.0.0/Zlib.x86_64-linux-gnu.tar.gz to /raid/home/thibaut/.julia/v0.6/CodecZlib/deps/usr/downloads/Zlib.x86_64-linux-gnu.tar.gz
while loading /raid/home/thibaut/.julia/v0.6/CodecZlib/deps/build.jl, in expression starting on line 92

========================================================================================================================================================================

============================================================================[ BUILD ERRORS ]============================================================================

WARNING: CodecZlib had build errors.

 - packages with build errors remain installed in /raid/home/thibaut/.julia/v0.6
 - build the package(s) and all dependencies with `Pkg.build("CodecZlib")`
 - build a single package by running its `deps/build.jl` script

========================================================================================================================================================================

[ViralBShah]

We probably should try and move to Julia 1.0 as soon as possible.

[ranjanan]

We've moved to 1.0