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Circuitscape / Circuitscape.jl

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
https://circuitscape.org
MIT License
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Pkg.test("Circuitscape"): Single test failure - Raster Pairwise #178

Closed Chulkey closed 4 years ago

Chulkey commented 5 years ago

Installing Julia v1.1 on Win10 machine for use with Curcuitscape/ResistanceGA in R. 

julia> using Pkg
julia> Pkg.add("Circuitscape") - Proceeds as normal

Pkg.test("Circuitscape") produces this result (though ran with no issue on another machine):

...
┌ Warning: 2019-04-04 15:07:00 : Cholmod supports only double precision. Changing precision to double.
└ @ Circuitscape C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\logging.jl:25
[ Info: 2019-04-04 15:07:00 : Reading maps
[ Info: 2019-04-04 15:07:00 : Resistance/Conductance map has 817 nodes
Raster Pairwise: Error During Test at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:291
  Got exception outside of a @test
  could not create mapping view: The operation completed successfully.
  Stacktrace:
   [1] error(::String) at .\error.jl:33
   [2] #mmap#1(::Bool, ::Bool, ::Function, ::Mmap.Anonymous, ::Type{Array{Float64,2}}, ::Tuple{Int64,Int64}, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Mmap\src\Mmap.jl:221
   [3] mmap(::Mmap.Anonymous, ::Type{Array{Float64,2}}, ::Tuple{Int64,Int64}, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Mmap\src\Mmap.jl:186
   [4] _shm_mmap_array(::Type, ::Tuple{Int64,Int64}, ::String, ::UInt16) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:660
   [5] shm_mmap_array(::Type, ::Tuple{Int64,Int64}, ::String, ::UInt16) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:639
   [6] #call#3(::Bool, ::Array{Int64,1}, ::Type{SharedArrays.SharedArray{Float64,2}}, ::Tuple{Int64,Int64}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:118   [7] Type at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:105 [inlined]
   [8] Type at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:347 [inlined]
   [9] initialize_cum_maps(::Array{Float64,2}, ::Bool) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:216
   [10] compute_graph_data_no_polygons(::Circuitscape.RasData{Float64,Int32}, ::Circuitscape.RasterFlags) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:226
   [11] _pt_file_no_polygons_path(::Circuitscape.RasData{Float64,Int32}, ::Circuitscape.RasterFlags, ::Dict{String,String}) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:60
   [12] raster_pairwise(::Type, ::Type, ::Dict{String,String}) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:29
   [13] _compute(::Type, ::Type, ::Dict{String,String}) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\run.jl:42
   [14] compute_single(::String) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:96
   [15] macro expansion at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:299 [inlined]
   [16] macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Test\src\Test.jl:1083 [inlined]
   [17] macro expansion at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:293 [inlined]
   [18] macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Test\src\Test.jl:1083 [inlined]
   [19] runtests(::typeof(compute_single)) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:260
   [20] top-level scope at C:\Users\User\.julia\packages\Circuitscape\yuRbe\test\runtests.jl:12 [inlined]
   [21] top-level scope at .\none:0
   [22] include at .\boot.jl:326 [inlined]
   [23] include_relative(::Module, ::String) at .\loading.jl:1038
   [24] include(::Module, ::String) at .\sysimg.jl:29
   [25] include(::String) at .\client.jl:403
   [26] top-level scope at none:0
   [27] eval(::Module, ::Any) at .\boot.jl:328
   [28] exec_options(::Base.JLOptions) at .\client.jl:243
   [29] _start() at .\client.jl:436
...

... 
┌ Warning: 2019-04-04 15:07:00 : Cholmod supports only double precision. Changing precision to double.
└ @ Circuitscape C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\logging.jl:25
[ Info: 2019-04-04 15:07:00 : Reading maps
[ Info: 2019-04-04 15:07:00 : Resistance/Conductance map has 817 nodes
Raster Pairwise: Error During Test at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:291
  Got exception outside of a @test
  could not create mapping view: The operation completed successfully.
  Stacktrace:
   [1] error(::String) at .\error.jl:33
   [2] #mmap#1(::Bool, ::Bool, ::Function, ::Mmap.Anonymous, ::Type{Array{Float64,2}}, ::Tuple{Int64,Int64}, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Mmap\src\Mmap.jl:221
   [3] mmap(::Mmap.Anonymous, ::Type{Array{Float64,2}}, ::Tuple{Int64,Int64}, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Mmap\src\Mmap.jl:186
   [4] _shm_mmap_array(::Type, ::Tuple{Int64,Int64}, ::String, ::UInt16) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:660
   [5] shm_mmap_array(::Type, ::Tuple{Int64,Int64}, ::String, ::UInt16) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:639
   [6] #call#3(::Bool, ::Array{Int64,1}, ::Type{SharedArrays.SharedArray{Float64,2}}, ::Tuple{Int64,Int64}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:118   [7] Type at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:105 [inlined]
   [8] Type at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\SharedArrays\src\SharedArrays.jl:347 [inlined]
   [9] initialize_cum_maps(::Array{Float64,2}, ::Bool) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:216
   [10] compute_graph_data_no_polygons(::Circuitscape.RasData{Float64,Int32}, ::Circuitscape.RasterFlags) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:226
   [11] _pt_file_no_polygons_path(::Circuitscape.RasData{Float64,Int32}, ::Circuitscape.RasterFlags, ::Dict{String,String}) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:60
   [12] raster_pairwise(::Type, ::Type, ::Dict{String,String}) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:29
   [13] _compute(::Type, ::Type, ::Dict{String,String}) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\run.jl:42
   [14] compute_single(::String) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:96
   [15] macro expansion at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:299 [inlined]
   [16] macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Test\src\Test.jl:1083 [inlined]
   [17] macro expansion at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:293 [inlined]
   [18] macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Test\src\Test.jl:1083 [inlined]
   [19] runtests(::typeof(compute_single)) at C:\Users\User\.julia\packages\Circuitscape\yuRbe\src\utils.jl:260
   [20] top-level scope at C:\Users\User\.julia\packages\Circuitscape\yuRbe\test\runtests.jl:12 [inlined]
   [21] top-level scope at .\none:0
   [22] include at .\boot.jl:326 [inlined]
   [23] include_relative(::Module, ::String) at .\loading.jl:1038
   [24] include(::Module, ::String) at .\sysimg.jl:29
   [25] include(::String) at .\client.jl:403
   [26] top-level scope at none:0
   [27] eval(::Module, ::Any) at .\boot.jl:328
   [28] exec_options(::Base.JLOptions) at .\client.jl:243
   [29] _start() at .\client.jl:436
...

Wondering if this test failure is something I should be concerned about and if so, any advice on a remedy?

ViralBShah commented 5 years ago

Tests need to pass cleanly. So this is worrisome and needs to be investigated.

Chulkey commented 5 years ago

Ok. Also, apologies for pasting same output twice. This is the summary of test results:

Test Summary:          | Pass  Error  Total
Single Precision Tests |  576      1    577
  Network Pairwise     |   93            93
  Network Advanced     |   12            12
  Raster Pairwise      |  320      1    321
  Raster Advanced      |    5             5
  Raster One to All    |  134           134
  Raster ALl to One    |   12            12
ERROR: LoadError: Some tests did not pass: 576 passed, 0 failed, 1 errored, 0 broken.
in expression starting at C:\Users\User\.julia\packages\Circuitscape\1UJ9H\test\runtests.jl:11
ERROR: Package Circuitscape errored during testing
Stacktrace:
 [1] pkgerror(::String, ::Vararg{String,N} where N) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\Types.jl:120
 [2] #test#66(::Bool, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\Operations.jl:1328
 [3] #test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:0 [inlined]
 [4] #test#44(::Bool, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:193
 [5] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:178 [inlined]
 [6] #test#43 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:175 [inlined]
 [7] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:175 [inlined]
 [8] #test#42 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:174 [inlined]
 [9] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:174 [inlined]
 [10] #test#41(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:173
 [11] test(::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:173
 [12] top-level scope at none:0

Any ideas on first steps for investigating? I'm unfamiliar with Julia language and am unsure how to diagnose testing errors.

anwilk commented 5 years ago

I am facing the same issue, additionally, the same error is spit back when using 1.0.3 happening after Cholmod changing the precision to double. Could the tests being run be throwing an error after converting to double?

ranjanan commented 5 years ago

@anwilk could you paste that error here please? I just throw a warning saying that there's a conversion to double going on. I have a suspicion the timing of that warning is coincidental.

anwilk commented 5 years ago

I think you're right about it being coincidental, it appears that other tests are completed and pass using double precision: Here is the inline warning and error...

Info: Testing sgVerify17 ┌ Warning: 2019-04-19 14:08:40 : Cholmod supports only double precision. Changing precision to double. └ @ Circuitscape C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\logging.jl:25 [ Info: 2019-04-19 14:08:40 : Reading maps [ Info: 2019-04-19 14:08:40 : Resistance/Conductance map has 817 nodes Raster Pairwise: Error During Test at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\utils.jl:291 Got exception outside of a @test could not create mapping view: The operation completed successfully.

and Stacktrace:

Stacktrace: [1] error(::String) at .\error.jl:33 [2] #mmap#1(::Bool, ::Bool, ::Function, ::Mmap.Anonymous, ::Type{Array{Float64,2}}, ::Tuple{Int64,Int64}, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\Mmap\src\Mmap.jl:221 [3] mmap(::Mmap.Anonymous, ::Type{Array{Float64,2}}, ::Tuple{Int64,Int64}, ::Int64) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\Mmap\src\Mmap.jl:186 [4] _shm_mmap_array(::Type, ::Tuple{Int64,Int64}, ::String, ::UInt16) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\SharedArrays\src\SharedArrays.jl:660 [5] shm_mmap_array(::Type, ::Tuple{Int64,Int64}, ::String, ::UInt16) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\SharedArrays\src\SharedArrays.jl:639 [6] #call#3(::Bool, ::Array{Int64,1}, ::Type{SharedArrays.SharedArray{Float64,2}}, ::Tuple{Int64,Int64}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\SharedArrays\src\SharedArrays.jl:118 [7] Type at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\SharedArrays\src\SharedArrays.jl:105 [inlined] [8] SharedArrays.SharedArray(::Array{Float64,2}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\SharedArrays\src\SharedArrays.jl:347 [9] initialize_cum_maps(::Array{Float64,2}, ::Bool) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\utils.jl:216 [10] compute_graph_data_no_polygons(::Circuitscape.RasData{Float64,Int32}, ::Circuitscape.RasterFlags) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:226 [11] _pt_file_no_polygons_path(::Circuitscape.RasData{Float64,Int32}, ::Circuitscape.RasterFlags, ::Dict{String,String}) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:60 [12] raster_pairwise(::Type, ::Type, ::Dict{String,String}) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\raster\pairwise.jl:29 [13] _compute(::Type, ::Type, ::Dict{String,String}) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\run.jl:42 [14] compute_single(::String) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\utils.jl:96 [15] macro expansion at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\utils.jl:299 [inlined] [16] macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\Test\src\Test.jl:1083 [inlined] [17] macro expansion at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\utils.jl:293 [inlined] [18] macro expansion at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.0\Test\src\Test.jl:1083 [inlined] [19] runtests(::typeof(compute_single)) at C:\Users\USER.julia\packages\Circuitscape\yuRbe\src\utils.jl:260 [20] top-level scope at C:\Users\USER.julia\packages\Circuitscape\yuRbe\test\runtests.jl:12 [inlined] [21] top-level scope at .\none:0 [22] include at .\boot.jl:317 [inlined] [23] include_relative(::Module, ::String) at .\loading.jl:1044 [24] include(::Module, ::String) at .\sysimg.jl:29 [25] include(::String) at .\client.jl:392 [26] top-level scope at none:0 [27] eval(::Module, ::Any) at .\boot.jl:319 [28] exec_options(::Base.JLOptions) at .\client.jl:243 [29] _start() at .\client.jl:425

Overall it seems to be the same error @Chulkey was experiencing

simon-tarr commented 5 years ago

I am also getting this error @ranjanan, when running the latest version of Circuitscape:

Test Summary:          | Pass  Error  Total
Single Precision Tests |  576      1    577
  Network Pairwise     |   93            93
  Network Advanced     |   12            12
  Raster Pairwise      |  320      1    321
  Raster Advanced      |    5             5
  Raster One to All    |  134           134
  Raster All to One    |   12            12
ERROR: LoadError: Some tests did not pass: 576 passed, 0 failed, 1 errored, 0 broken.
in expression starting at C:\Users\simon.tarr\.julia\packages\Circuitscape\x2r8m\test\runtests.jl:11
ERROR: Package Circuitscape errored during testing
Stacktrace:
 [1] pkgerror(::String, ::Vararg{String,N} where N) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\Types.jl:120
 [2] #test#66(::Bool, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\Operations.jl:1328
 [3] #test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:0 [inlined]
 [4] #test#44(::Bool, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:193
 [5] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:178 [inlined]
 [6] #test#43 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:175 [inlined]
 [7] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:175 [inlined]
 [8] #test#42 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:174 [inlined]
 [9] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:174 [inlined]
 [10] #test#41(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:173
 [11] test(::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.1\Pkg\src\API.jl:173
 [12] top-level scope at none:0
simon-tarr commented 5 years ago

Hello @ranjanan any news on a fix for this? I understand that this is open source software and comes with no guarantees in terms of reliability and operability...I really appreciate the work you're doing on this project and I honestly don't mean to pester you! Having said that, I do have some upcoming projects that I'd love to use Circuitscape for. Looking forward to hearing from you.

ViralBShah commented 5 years ago

I am guessing @ranjanan was busy with the semester winding down. @ranjanan Might these be windows related only?

@simon-tarr Can you try on a different windows computer? Is the one you are using 32-bit or 64-bit windows?

simon-tarr commented 5 years ago

Hi @ViralBShah. I believe @ranjanan has been a little busy yes. To answer your question I have tried it on two 64-Bit Windows machines, both with the same result. I do have access to a Linux machine so I think my next port of call will be to run the tests on there and see if I get the same result.

ranjanan commented 5 years ago

I've no idea on how to debug this! I've asked for help here: https://discourse.julialang.org/t/mmap-error-on-windows/24594

mattwilliamson13 commented 5 years ago

I'm having this issue on a Windows 10 Machine (64 bit), but not on MacOS so thinking it's Windows issue.

ranjanan commented 5 years ago

@mattwilliamson13 it is a windows specific issue.

mattwilliamson13 commented 5 years ago

Did the update to Omniscape also resolve this issue? Or is it still not possible to pass tests on a Windows machine?

ranjanan commented 5 years ago

No it didn't. The way to resolve this is to get rid of the SharedArray dependency, but we are planning to do this as we move Circuitscape to Julia's new multi-threading infrastructure (https://github.com/Circuitscape/Circuitscape.jl/issues/197, https://julialang.org/blog/2019/07/multithreading), which we will prioritize from now on.

ViralBShah commented 5 years ago

@Chulkey Do you still get the failure on Julia 1.2? Can you say more about your machine? Which exact version of windows? Is it 32-bit windows or 64-bit? Is Julia 32-bit or 64-bit. In Julia, please paste the output of versioninfo().

VLucet commented 5 years ago

I am having the same problem on Windows 10

Test Summary:          | Pass  Error  Total
Double Precision Tests |  576      1    577
  Network Pairwise     |   93            93
  Network Advanced     |   12            12
  Raster Pairwise      |  320      1    321
  Raster Advanced      |    5             5
  Raster One to All    |  134           134
  Raster All to One    |   12            12
ERROR: LoadError: Some tests did not pass: 576 passed, 0 failed, 1 errored, 0 broken.
in expression starting at C:\Users\McGill\.julia\packages\Circuitscape\mKAhh\test\runtests.jl:11
ERROR: Package Circuitscape errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\Types.jl:112
[2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\Operations.jl:1288
[3] #test at .\none:0 [inlined]
[4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:245
[5] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:233 [inlined]
[6] #test#61 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:230 [inlined]
[7] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:230 [inlined]
[8] #test#60 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:229 [inlined]
[9] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:229 [inlined]
[10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:228
[11] test(::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:228
[12] top-level scope at REPL[8]:1
ViralBShah commented 4 years ago

223 should close this issue. Please file new issues if problem perisists on the latest master.

ViralBShah commented 4 years ago

Actually more likely a dup of #188