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CirroBioApps / mudata-explorer

Exploratory data analysis of multimodal datasets
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Having trouble using the app #1

Closed fmaclean closed 4 months ago

fmaclean commented 5 months ago

Hi Sam,

I can load data in but when I try to use any of the functions I am receiving this error:

File "/home/adminuser/venv/lib/python3.11/site-packages/streamlit/runtime/scriptrunner/script_runner.py", line 600, in _run_script exec(code, module.dict) File "/mount/src/mudata-explorer/pages/processes.py", line 41, in process.run(container) File "/mount/src/mudata-explorer/mudata_explorer/process/dbscan.py", line 90, in run mdata.mod[modality].obs[dest_key] = clusters


File "/home/adminuser/venv/lib/python3.11/site-packages/pandas/core/frame.py", line 4311, in __setitem__
    self._set_item(key, value)
File "/home/adminuser/venv/lib/python3.11/site-packages/pandas/core/frame.py", line 4524, in _set_item
    value, refs = self._sanitize_column(value)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/adminuser/venv/lib/python3.11/site-packages/pandas/core/frame.py", line 5266, in _sanitize_column
    com.require_length_match(value, self.index)
File "/home/adminuser/venv/lib/python3.11/site-packages/pandas/core/common.py", line 573, in require_length_match
    raise ValueError(

Are you able to help me get started so I can try analyzing the data? 

Thanks,
Finn