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CityUHK-CompBio / DeepCC

DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
https://CityUHK-CompBio.github.io/DeepCC/
MIT License
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NA returned by get_DeepCC_label #16

Closed ahwanpandey closed 1 year ago

ahwanpandey commented 2 years ago

Hello,

I get about 12 out of 300 samples with NA prediction after running get_DeepCC_label with default parameters. Could you please explain why this happens and if there is a workaround?

Thanks, Ahwan

zero19970 commented 1 year ago

Hi Ahwan,

Prediction with get_DeepCC_label will return the probability of each type. If the probabilities of all types are all lower than 0.5, then the final prediction will be NA.

Best wish, Chenghang