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ClandininLab / brainsss2

refactor of the brainsss repo for 2-photon imaging analysis
MIT License
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replace ants SyN with dipy implementation #23

Closed poldrack closed 2 years ago

poldrack commented 2 years ago

DiPY has implemented a version of the SyN algorithm in pure python: https://dipy.org/documentation/1.1.1./examples_built/syn_registration_3d/

we should test this to see whether it performs as advertised, as ANTs has some annoying bugs.

poldrack commented 2 years ago

this probably won't work, initial exploration shows that it doesn't seem to have some needed functionality, such as working with composite transforms