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ClearAnatomics / ClearMap

ClearMap 2 with WobblyStitcher, TubeMap and CellMap
https://clearanatomics.github.io/ClearMapDocumentation/
GNU General Public License v3.0
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Spyder 5.2.2 incompatible to Anaconda 3 #108

Open jeng87 opened 2 years ago

jeng87 commented 2 years ago

ISSUE New version of Spyder 5.2.2 is not compatible to be run under Anaconda 3 ClearMapStable.yml environment, instead Spyder 3 would be forced to run automatically. However, many Spyder 3 dependencies do not support to ClearMap2.

ANSWER Use Anaconda 3 ClearMap.yml instead to create an environment with flexible package dependencies and then run ClearMap2 scripts in Spyder 3. Because ClearMapStable.yml is the version with frozen package dependencies which can create restriction of changing certain dependency's version. Thus, try to use ClearMap.yml first.

crousseau commented 2 years ago

You can also skip (comment) spyder in the ClearMap.yml file and then pip install 'spyder<5'