Some problems about Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature

ClearAnatomics / ClearMap

ClearMap 2 with WobblyStitcher, TubeMap and CellMap

https://clearanatomics.github.io/ClearMapDocumentation/

GNU General Public License v3.0

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Some problems about Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature #131

Open RenJiaY opened 10 months ago

RenJiaY commented 10 months ago

Hello, I downloaded the Dataset for Mapping the fine scale organization of the vasculature on the OSFHOME. When I use the data set, I can't find out where the training data set is. Is it in the Graph' folder? But I can't open the compressed packet in this folder. How can I open and use this gt file? Can you provide an introduction to the data set? Thank you very much!

ChristophKirst commented 10 months ago

Hi,

at OSF: https://osf.io/sa3x8/

you can find the raw data in the raw folder. Applying the tubemap pipeline correctly will give you a graph in graph-tool binarey file format gt. It is best opened by the ClearMap software as we use our own extensions to save the geometry of the graph in the file as well. The TubeMap tutorial shows how to open and use the gt files: https://christophkirst.github.io/ClearMap2Documentation/html/TubeMap.html

Let me know if this answers your question.