Transform points error

[narasa0]

Hi,

I am getting the following copy error during the cell alignment part of the code. Can you please help me fix the error.

Thanks, Arun

907 -1.045990 157.733406 0.016110 23.7 Traceback (most recent call last):

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:825 in move os.rename(src, real_dst)

OSError: [Errno 18] Invalid cross-device link: '/tmp/tmpzvvf54_z' -> '/mnt/data0/arun/data/409/elastix_resampled_to_auto/TransformParameters.0.txt'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/spyder_kernels/py3compat.py:356 in compat_exec exec(code, globals, locals)

File /mnt/data0/arun/code/python/clearMap/CellMap_fromClearMap.py:319 coordinates_transformed = transformation(coordinates);

File /mnt/data0/arun/code/python/clearMap/CellMap_fromClearMap.py:304 in transformation coordinates = elx.transform_points(

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/Alignment/Elastix.py:952 in transform_points set_path_transform_files(transform_parameter_dir)

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/site-packages/ClearMap2-2.1.0-py3.9-linux-x86_64.egg/ClearMap/Alignment/Elastix.py:336 in set_path_transform_files shutil.move(tmpfn, ff)

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:845 in move copy_function(src, real_dst)

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:445 in copy2 copystat(src, dst, follow_symlinks=follow_symlinks)

File ~/miniconda3/envs/ClearMapUi39/lib/python3.9/shutil.py:384 in copystat lookup("utime")(dst, ns=(st.st_atime_ns, st.st_mtime_ns),

PermissionError: [Errno 1] Operation not permitted