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ClearAnatomics / ClearMap

ClearMap 2 with WobblyStitcher, TubeMap and CellMap
https://clearanatomics.github.io/ClearMapDocumentation/
GNU General Public License v3.0
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ClearMap GUI missing "Run detection" button #146

Open ved-sharma opened 3 months ago

ved-sharma commented 3 months ago

Hello,

I installed v2.1.4 on an Ubuntu 22.04 machine with no issues. I could also go through the pipeline in the GUI with tabs Sample, Alignment and Cellmap, until the Cell detection part, where I tested the parameters on a cropped region as discussed in the document here. When I tried to run the cell detection for the whole tissue, I noticed that in my GUI the button "Run detection" is missing. Compare Figure 4 on this page with the screenshot of my GUI below:

Screenshot_missing_run_detection_button

Any idea on how I can proceed further? FYI - I installed vtk, as was suggested in the Log file. This made scrolling through the data smoother. Let me know if you need more details.

Thanks! Ved

crousseau commented 3 months ago

Hi, @ved-sharma It has been moved under RunCellMap. I need to update the documentation but I'm rushing for the version 3 at the moment. Let me know if you still have issues