I use ClearMap on personal lighsheet microscopy vascular dataset.
Before doing the skeletonization, I would like to add a post-treatment after the filling.
For now, I extract the binary_filled.npy as tiff files, treat them and save as a new binary_filled.tif that I convert to npy file. But when I want to apply the skeletonization and graph creation this new binary_filed.npy I have the following error:
If I start the process from binary_filled.npy without a post treatment, I do not have the error.
I suppose that it is linked to the way the binary filled array is stored, but I do not understand what do I have to change.
Thank you very much if you can help me on this matter.
Hello,
I use ClearMap on personal lighsheet microscopy vascular dataset. Before doing the skeletonization, I would like to add a post-treatment after the filling. For now, I extract the binary_filled.npy as tiff files, treat them and save as a new binary_filled.tif that I convert to npy file. But when I want to apply the skeletonization and graph creation this new binary_filed.npy I have the following error:
If I start the process from binary_filled.npy without a post treatment, I do not have the error.
I suppose that it is linked to the way the binary filled array is stored, but I do not understand what do I have to change.
Thank you very much if you can help me on this matter.
Marion Giraud