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ClearVolume / clearvolume

ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. With ClearVolume you can see live on your screen the stacks acquired by your microscope instead of waiting for offline post-processing to give you an intuitive and comprehensive view on your data.
http://clearvolume.github.io
GNU Lesser General Public License v3.0
44 stars 11 forks source link

error when opening volume #54

Open tischi opened 7 years ago

tischi commented 7 years ago

Hello,

We tried to open an image and got below error messages. Maybe a special thing in our case is that we are running Fiji via VMHorizon Remote Desktop....

[WARNING] ShadowMenu: menu item already exists: existing: [Help, About ImageJ...] : net.imagej.app.AboutImageJ [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Help, About ImageJ...] : net.imagej.app.AboutImageJ [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Appearance...] : net.imagej.options.OptionsAppearance [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Appearance...] : net.imagej.options.OptionsAppearance [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Arrow Tool...] : net.imagej.options.OptionsArrowTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Arrow Tool...] : net.imagej.options.OptionsArrowTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Channels...] : net.imagej.options.OptionsChannels [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Channels...] : net.imagej.options.OptionsChannels [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Compatibility...] : net.imagej.options.OptionsCompatibility [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Compatibility...] : net.imagej.options.OptionsCompatibility [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Compiler...] : net.imagej.options.OptionsCompiler [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Compiler...] : net.imagej.options.OptionsCompiler [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Conversions...] : net.imagej.options.OptionsConversions [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Conversions...] : net.imagej.options.OptionsConversions [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, DICOM...] : net.imagej.options.OptionsDicom [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, DICOM...] : net.imagej.options.OptionsDicom [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Image, Overlay, Overlay Options...] : net.imagej.options.OptionsOverlay [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Image, Overlay, Overlay Options...] : net.imagej.options.OptionsOverlay [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Fonts...] : net.imagej.options.OptionsFont [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Fonts...] : net.imagej.options.OptionsFont [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Input/Output...] : net.imagej.options.OptionsInputOutput [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Input/Output...] : net.imagej.options.OptionsInputOutput [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Image, Lookup Tables, Select...] : net.imagej.lut.LUTSelector [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Image, Lookup Tables, Select...] : net.imagej.lut.LUTSelector [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Line Width...] : net.imagej.options.OptionsLineWidth [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Line Width...] : net.imagej.options.OptionsLineWidth [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Memory & Threads...] : net.imagej.options.OptionsMemoryAndThreads [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Memory & Threads...] : net.imagej.options.OptionsMemoryAndThreads [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Misc...] : net.imagej.options.OptionsMisc [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Misc...] : net.imagej.options.OptionsMisc [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Point Tool...] : net.imagej.options.OptionsPointTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Point Tool...] : net.imagej.options.OptionsPointTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [File, Preferences] : net.imagej.app.Preferences [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [File, Preferences] : net.imagej.app.Preferences [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Profile Plot Options...] : net.imagej.options.OptionsProfilePlot [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Profile Plot Options...] : net.imagej.options.OptionsProfilePlot [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Proxy Settings...] : net.imagej.options.OptionsProxy [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Proxy Settings...] : net.imagej.options.OptionsProxy [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [File, Quit] : net.imagej.app.QuitProgram [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [File, Quit] : net.imagej.app.QuitProgram [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Reset] : net.imagej.options.OptionsReset [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Reset] : net.imagej.options.OptionsReset [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Rounded Rect Tool...] : net.imagej.options.OptionsRoundedRectangleTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Rounded Rect Tool...] : net.imagej.options.OptionsRoundedRectangleTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] [WARNING] ShadowMenu: menu item already exists: existing: [Edit, Options, Wand Tool...] : net.imagej.options.OptionsWandTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] ignored: [Edit, Options, Wand Tool...] : net.imagej.options.OptionsWandTool [file:/C:/Users/tischer/Desktop/Fiji.app/jars/imagej-common-0.24.3.jar] null ClearGLWindow: GLProfile[GL4bc/GL4bc.hw] 1.0 1.0 1.0 WindowsFeb 24, 2017 10:15:59 AM org.bridj.BridJ log INFO: Library not found : atiocl64 Feb 24, 2017 10:15:59 AM org.bridj.BridJ log INFO: Library not found : amdocl64 Feb 24, 2017 10:15:59 AM org.bridj.BridJ log INFO: Library not found : atiocl32 Feb 24, 2017 10:15:59 AM org.bridj.BridJ log INFO: Library not found : atiocl Feb 24, 2017 10:15:59 AM org.bridj.BridJ log INFO: Library not found : amdocl32 Feb 24, 2017 10:15:59 AM org.bridj.BridJ log INFO: Library not found : amdocl javax.mail.AuthenticationFailedException: 534-5.7.14 <https://accounts.google.com/signin/continue?sarp=1&scc=1&plt=AKgnsbvG 534-5.7.14 eYBqFqL_oQZjX-L0Sgd3lY9qR77j_UgxicIWteWPB5mkH0Tv5dAmKuPZxJdprbQ9X8R10w 534-5.7.14 iC1igy9h88lInGF7ymtj5mF1Sl_h1SRUO13hAkq-EnWzlzuIsWKVOyg7cWKNnwY62WH2K2 534-5.7.14 U1uFfxLY4UeKXAnbGAFwsq6Hxmn8_7rUT7j7yFwabeKY34uLADFdRd_OUSXcAEwCnE3gCX 534-5.7.14 axfRFXyg3WdoFkhF9Tkm7P6egngVA> Please log in via your web browser and 534-5.7.14 then try again. 534-5.7.14 Learn more at 534 5.7.14 https://support.google.com/mail/answer/78754 e74sm1549404wmd.2 - gsmtp

at com.sun.mail.smtp.SMTPTransport$Authenticator.authenticate(SMTPTransport.java:826)
at com.sun.mail.smtp.SMTPTransport.authenticate(SMTPTransport.java:761)
at com.sun.mail.smtp.SMTPTransport.protocolConnect(SMTPTransport.java:685)
at javax.mail.Service.connect(Service.java:317)
at javax.mail.Service.connect(Service.java:176)
at javax.mail.Service.connect(Service.java:125)
at javax.mail.Transport.send0(Transport.java:253)
at javax.mail.Transport.send(Transport.java:124)
at badtrack.email.GmailClient.sendMessage(GmailClient.java:83)
at badtrack.email.GmailBadTrackNotifier.notify(GmailBadTrackNotifier.java:65)
at badtrack.BadTrack$1.uncaughtException(BadTrack.java:198)
at java.lang.ThreadGroup.uncaughtException(ThreadGroup.java:1057)
at java.lang.ThreadGroup.uncaughtException(ThreadGroup.java:1052)
at java.lang.Thread.dispatchUncaughtException(Thread.java:1952)

com.jogamp.opengl.util.AnimatorBase$UncaughtAnimatorException: com.jogamp.opengl.GLException: Caught CLException: OpenCL Error : (make sure to log all errors with environment variable CL_LOG_ERRORS=stdout) on thread SciJava-41fe8e5f-Thread-2-FPSAWTAnimator#00-Timer0 at com.jogamp.opengl.util.AWTAnimatorImpl.display(AWTAnimatorImpl.java:92) at com.jogamp.opengl.util.AnimatorBase.display(AnimatorBase.java:452) at com.jogamp.opengl.util.FPSAnimator$MainTask.run(FPSAnimator.java:178) at java.util.TimerThread.mainLoop(Timer.java:555) at java.util.TimerThread.run(Timer.java:505) Caused by: com.jogamp.opengl.GLException: Caught CLException: OpenCL Error : (make sure to log all errors with environment variable CL_LOG_ERRORS=stdout) on thread SciJava-41fe8e5f-Thread-2-FPSAWTAnimator#00-Timer0 at com.jogamp.opengl.GLException.newGLException(GLException.java:76) at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1327) at jogamp.opengl.GLDrawableHelper.invokeGL(GLDrawableHelper.java:1147) at com.jogamp.newt.opengl.GLWindow.display(GLWindow.java:759) at com.jogamp.opengl.util.AWTAnimatorImpl.display(AWTAnimatorImpl.java:81) ... 4 more Caused by: com.nativelibs4java.opencl.CLException: OpenCL Error : (make sure to log all errors with environment variable CL_LOG_ERRORS=stdout) at com.nativelibs4java.opencl.CLException.error(CLException.java:310) at com.nativelibs4java.opencl.JavaCL$OpenCLProbeLibrary.getPlatformIDs(JavaCL.java:155) at com.nativelibs4java.opencl.JavaCL$OpenCLProbeLibrary.hasOpenCL1_0(JavaCL.java:166) at clearcl.backend.javacl.Utils.initCL(Utils.java:91) at clearcl.backend.javacl.ClearCLBackendJavaCL.(ClearCLBackendJavaCL.java:57) at clearcl.backend.javacl.ClearCLBackendJavaCL.(ClearCLBackendJavaCL.java:51) at clearcl.backend.ClearCLBackends.getBackendList(ClearCLBackends.java:31) at clearcl.backend.ClearCLBackends.getFunctionalBackend(ClearCLBackends.java:65) at clearcl.backend.ClearCLBackends.getBestBackend(ClearCLBackends.java:99) at clearvolume.renderer.opencl.OpenCLDevice.initCL(OpenCLDevice.java:48) at clearvolume.renderer.opencl.OpenCLVolumeRenderer.initVolumeRenderer(OpenCLVolumeRenderer.java:130) at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.init(ClearGLVolumeRenderer.java:818) at jogamp.opengl.GLDrawableHelper.init(GLDrawableHelper.java:644) at jogamp.opengl.GLDrawableHelper.init(GLDrawableHelper.java:667) at jogamp.opengl.GLAutoDrawableBase$1.run(GLAutoDrawableBase.java:431) at jogamp.opengl.GLDrawableHelper.invokeGLImpl(GLDrawableHelper.java:1291) ... 7 more