ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. With ClearVolume you can see live on your screen the stacks acquired by your microscope instead of waiting for offline post-processing to give you an intuitive and comprehensive view on your data.
Hi,
Since last week my clearVolume plugin is not working. The window of clearVolume will be open, but it keeps loading and nothing will happen. BTW, I updated FIJI. I am using windows 10.
I got this error:
Warning: Caught Exception while retrieving executable temp base directory:
java.io.IOException: Could not determine a temporary executable directory
at com.jogamp.common.util.IOUtil.getTempDir(IOUtil.java:1336)
at com.jogamp.common.util.cache.TempFileCache.(TempFileCache.java:84)
at com.jogamp.common.util.cache.TempJarCache.initSingleton(TempJarCache.java:96)
at com.jogamp.common.os.Platform$1.run(Platform.java:313)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.common.os.Platform.(Platform.java:290)
at com.jogamp.opengl.GLProfile.(GLProfile.java:154)
at clearvolume.main.CheckRequirements.check(CheckRequirements.java:48)
at clearvolume.network.client.main.ClearVolumeClientMain$1.run(ClearVolumeClientMain.java:55)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
UNKNOW EXCEPTION!
java.lang.UnsatisfiedLinkError: Can't load library: C:\Users\RASTI\Desktop\fiji-win64 (5)\Fiji.app\natives\windows-amd64\gluegen_rt.dll
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1835)
at java.lang.Runtime.load0(Runtime.java:811)
at java.lang.System.load(System.java:1088)
at com.jogamp.common.jvm.JNILibLoaderBase.loadLibraryInternal(JNILibLoaderBase.java:625)
at com.jogamp.common.jvm.JNILibLoaderBase.access$000(JNILibLoaderBase.java:64)
at com.jogamp.common.jvm.JNILibLoaderBase$DefaultAction.loadLibrary(JNILibLoaderBase.java:107)
at com.jogamp.common.jvm.JNILibLoaderBase.loadLibrary(JNILibLoaderBase.java:488)
at com.jogamp.common.os.DynamicLibraryBundle$GlueJNILibLoader.loadLibrary(DynamicLibraryBundle.java:427)
at com.jogamp.common.os.Platform$1.run(Platform.java:321)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.common.os.Platform.(Platform.java:290)
at com.jogamp.opengl.GLProfile.(GLProfile.java:154)
at clearvolume.main.CheckRequirements.check(CheckRequirements.java:48)
at clearvolume.network.client.main.ClearVolumeClientMain$1.run(ClearVolumeClientMain.java:55)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
com.apple.eawt.Application
UNKNOW EXCEPTION!
java.lang.NoClassDefFoundError: Could not initialize class com.jogamp.opengl.GLProfile
at clearvolume.main.CheckRequirements.check(CheckRequirements.java:48)
at clearvolume.network.client.main.ClearVolumeClientMain$1.run(ClearVolumeClientMain.java:55)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
java.lang.NoClassDefFoundError: Could not initialize class com.jogamp.opengl.GLProfile
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.(ClearGLVolumeRenderer.java:88)
at clearvolume.renderer.factory.ClearVolumeRendererFactory.internalCreateOpenCLRenderer(ClearVolumeRendererFactory.java:281)
at clearvolume.renderer.factory.ClearVolumeRendererFactory.newOpenCLRenderer(ClearVolumeRendererFactory.java:253)
at de.mpicbg.jug.clearvolume.ImgLib2ClearVolume.initClearVolumeUnsignedShortArrayImg(ImgLib2ClearVolume.java:273)
at de.mpicbg.jug.clearvolume.ImgLib2ClearVolume.initRealImgs(ImgLib2ClearVolume.java:511)
at de.mpicbg.jug.clearvolume.gui.ClearVolumeManager.run(ClearVolumeManager.java:182)
at de.mpicbg.jug.clearvolume.gui.GenericClearVolumeGui.launchClearVolumeManager(GenericClearVolumeGui.java:306)
at de.mpicbg.jug.clearvolume.gui.GenericClearVolumeGui.(GenericClearVolumeGui.java:163)
at de.mpicbg.jug.plugins.ClearVolumePlugin.run(ClearVolumePlugin.java:90)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)
Hi, Since last week my clearVolume plugin is not working. The window of clearVolume will be open, but it keeps loading and nothing will happen. BTW, I updated FIJI. I am using windows 10. I got this error: Warning: Caught Exception while retrieving executable temp base directory: java.io.IOException: Could not determine a temporary executable directory at com.jogamp.common.util.IOUtil.getTempDir(IOUtil.java:1336) at com.jogamp.common.util.cache.TempFileCache.(TempFileCache.java:84)
at com.jogamp.common.util.cache.TempJarCache.initSingleton(TempJarCache.java:96)
at com.jogamp.common.os.Platform$1.run(Platform.java:313)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.common.os.Platform.(Platform.java:290)
at com.jogamp.opengl.GLProfile.(GLProfile.java:154)
at clearvolume.main.CheckRequirements.check(CheckRequirements.java:48)
at clearvolume.network.client.main.ClearVolumeClientMain$1.run(ClearVolumeClientMain.java:55)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
UNKNOW EXCEPTION!
java.lang.UnsatisfiedLinkError: Can't load library: C:\Users\RASTI\Desktop\fiji-win64 (5)\Fiji.app\natives\windows-amd64\gluegen_rt.dll
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1835)
at java.lang.Runtime.load0(Runtime.java:811)
at java.lang.System.load(System.java:1088)
at com.jogamp.common.jvm.JNILibLoaderBase.loadLibraryInternal(JNILibLoaderBase.java:625)
at com.jogamp.common.jvm.JNILibLoaderBase.access$000(JNILibLoaderBase.java:64)
at com.jogamp.common.jvm.JNILibLoaderBase$DefaultAction.loadLibrary(JNILibLoaderBase.java:107)
at com.jogamp.common.jvm.JNILibLoaderBase.loadLibrary(JNILibLoaderBase.java:488)
at com.jogamp.common.os.DynamicLibraryBundle$GlueJNILibLoader.loadLibrary(DynamicLibraryBundle.java:427)
at com.jogamp.common.os.Platform$1.run(Platform.java:321)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.common.os.Platform.(Platform.java:290)
at com.jogamp.opengl.GLProfile.(GLProfile.java:154)
at clearvolume.main.CheckRequirements.check(CheckRequirements.java:48)
at clearvolume.network.client.main.ClearVolumeClientMain$1.run(ClearVolumeClientMain.java:55)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
com.apple.eawt.Application
UNKNOW EXCEPTION!
java.lang.NoClassDefFoundError: Could not initialize class com.jogamp.opengl.GLProfile
at clearvolume.main.CheckRequirements.check(CheckRequirements.java:48)
at clearvolume.network.client.main.ClearVolumeClientMain$1.run(ClearVolumeClientMain.java:55)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
java.lang.NoClassDefFoundError: Could not initialize class com.jogamp.opengl.GLProfile
at clearvolume.renderer.cleargl.ClearGLVolumeRenderer.(ClearGLVolumeRenderer.java:88)
at clearvolume.renderer.factory.ClearVolumeRendererFactory.internalCreateOpenCLRenderer(ClearVolumeRendererFactory.java:281)
at clearvolume.renderer.factory.ClearVolumeRendererFactory.newOpenCLRenderer(ClearVolumeRendererFactory.java:253)
at de.mpicbg.jug.clearvolume.ImgLib2ClearVolume.initClearVolumeUnsignedShortArrayImg(ImgLib2ClearVolume.java:273)
at de.mpicbg.jug.clearvolume.ImgLib2ClearVolume.initRealImgs(ImgLib2ClearVolume.java:511)
at de.mpicbg.jug.clearvolume.gui.ClearVolumeManager.run(ClearVolumeManager.java:182)
at de.mpicbg.jug.clearvolume.gui.GenericClearVolumeGui.launchClearVolumeManager(GenericClearVolumeGui.java:306)
at de.mpicbg.jug.clearvolume.gui.GenericClearVolumeGui.(GenericClearVolumeGui.java:163)
at de.mpicbg.jug.plugins.ClearVolumePlugin.run(ClearVolumePlugin.java:90)
at org.scijava.command.CommandModule.run(CommandModule.java:196)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:163)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63)
at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:750)