tibuch
commented
9 years ago I just tried ClearVolume in Fiji and I get the same error. I started Fiji with
$HOME/Fiji.app/ImageJ-linux64 --java-home /usr/lib/jvm/java-8-oracle/Open tibuch opened 9 years ago
tibuch
commented
9 years ago I just tried ClearVolume in Fiji and I get the same error. I started Fiji with
$HOME/Fiji.app/ImageJ-linux64 --java-home /usr/lib/jvm/java-8-oracle/
royerloic
commented
9 years ago Ok, this seems to be a problem with JOGL . Could you test this executable JAR: https://github.com/ClearVolume/ClearGL/releases/download/1.0.0/TestProg.jar (or if you prefer compile and run the corresponding code in ClearGL cleargl.testprog.JOGLTestProgram.java) It is a simple test JOGL program. If that fails we have to fill up a bug report upstream to the JOGL Team...
royerloic
commented
9 years ago This seems to be related to the following JOGL bug:
http://forum.jogamp.org/Crash-using-MESA-drivers-td4031717.html http://forum.jogamp.org/Crash-using-MESA-drivers-td4031717.html
https://jogamp.org/bugzilla/show_bug.cgi?id=986 https://jogamp.org/bugzilla/show_bug.cgi?id=986
Are you sure that you are using the best and brightest graphics drivers
On 09 Jun 2015, at 12:37, tibuch notifications@github.com wrote:
I just tried ClearVolume in Fiji and I get the same error. I started Fiji with
$HOME/Fiji.app/ImageJ-linux64 --java-home /usr/lib/jvm/java-8-oracle/ — Reply to this email directly or view it on GitHub https://github.com/ClearVolume/mpicbg-knip-clearvolume/issues/11#issuecomment-110311618.
Dr. Loïc Alain Royer
Post-Doc - Myers Lab Max Planck Institute of Molecular Cell Biology and Genetics Pfotenhauerstr. 108 01307 Dresden
Too short? Here's why: http://emailcharter.org/
tibuch
commented
9 years ago I executed TestProg.jar and get this:
Java HotSpot(TM) 64-Bit Server VM warning: You have loaded library /tmp/jogamp_0000/file_cache/jln3728954701614950904/jln6981335565404265428/libnativewindow_awt.so which might have disabled stack guard. The VM will try to fix the stack guard now.
It's highly recommended that you fix the library with 'execstack -c <libfile>', or link it with '-z noexecstack'.
Exception in thread "main" java.lang.UnsatisfiedLinkError: /tmp/jogamp_0000/file_cache/jln3728954701614950904/jln6981335565404265428/libnativewindow_awt.so: /tmp/jogamp_0000/file_cache/jln3728954701614950904/jln6981335565404265428/libnativewindow_awt.so: wrong ELF class: ELFCLASS32 (Possible cause: architecture word width mismatch)
at java.lang.ClassLoader$NativeLibrary.load(Native Method)
at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1937)
at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1822)
at java.lang.Runtime.load0(Runtime.java:809)
at java.lang.System.load(System.java:1086)
at com.jogamp.common.jvm.JNILibLoaderBase.loadLibraryInternal(JNILibLoaderBase.java:575)
at com.jogamp.common.jvm.JNILibLoaderBase.access$000(JNILibLoaderBase.java:63)
at com.jogamp.common.jvm.JNILibLoaderBase$DefaultAction.loadLibrary(JNILibLoaderBase.java:95)
at com.jogamp.common.jvm.JNILibLoaderBase.loadLibrary(JNILibLoaderBase.java:459)
at jogamp.nativewindow.NWJNILibLoader.access$000(NWJNILibLoader.java:39)
at jogamp.nativewindow.NWJNILibLoader$1.run(NWJNILibLoader.java:49)
at jogamp.nativewindow.NWJNILibLoader$1.run(NWJNILibLoader.java:41)
at java.security.AccessController.doPrivileged(Native Method)
at jogamp.nativewindow.NWJNILibLoader.loadNativeWindow(NWJNILibLoader.java:41)
at jogamp.nativewindow.jawt.JAWTUtil.<clinit>(JAWTUtil.java:336)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at com.jogamp.nativewindow.NativeWindowFactory$3.run(NativeWindowFactory.java:341)
at com.jogamp.nativewindow.NativeWindowFactory$3.run(NativeWindowFactory.java:337)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.nativewindow.NativeWindowFactory.initSingleton(NativeWindowFactory.java:337)
at com.jogamp.opengl.GLProfile.initProfilesForDefaultDevices(GLProfile.java:1718)
at com.jogamp.opengl.GLProfile.access$000(GLProfile.java:79)
at com.jogamp.opengl.GLProfile$1.run(GLProfile.java:229)
at java.security.AccessController.doPrivileged(Native Method)
at com.jogamp.opengl.GLProfile.initSingleton(GLProfile.java:215)
at com.jogamp.opengl.GLProfile.getDefaultDevice(GLProfile.java:2003)
at cleargl.testprog.JOGLTestProgram.main(JOGLTestProgram.java:15)
pure virtual method called
terminate called without an active exception
Aborted (core dumped)Nvidia driver version is 346.72.
Hi @fjug and @royerloic
I tried to use ClearVolume with KNIME. After I click on the ClearVolume-Tab KNIME shuts down without any error message. I only get a huge log file.
I use KNIME 2.11.3 with ClearVolume Integration 0.1.0.20150513180. Xmx is set to 28g.
ErrorLog: