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CliMA / ClimaAtmos.jl

ClimaAtmos.jl is a library for building atmospheric circulation models that is designed from the outset to leverage data assimilation and machine learning tools. We welcome contributions!
Apache License 2.0
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problem running tests #1544

Closed francispoulin closed 1 year ago

francispoulin commented 1 year ago

I am new to ClimaAtmos.jl but am very keen to learn to use this library. My initial attempt to run the tests have failed, and very likely because I am doing something silly.

I have followed the instructions to get started and found the following:

  1. git clone worked fine and moved into the new folder.
  2. instantiated the dependencies, following the instructions, and that seemed to work fine. I copied my current status in julia --project in case someone things something looks out of place.
  3. When I try running the tests I get an error as I am told I need to instantiate to install all recorded dependencies. I did that before but clearly something didn't go well. I copied my output below.

Can someone help me to figure out what I am doing wrong?

$ julia --project=test test/runtests.jl
ERROR: LoadError: ArgumentError: Package SafeTestsets [1bc83da4-3b8d-516f-aca4-4fe02f6d838f] is required but does not seem to be installed:
 - Run `Pkg.instantiate()` to install all recorded dependencies.

Stacktrace:
 [1] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1306
 [2] _require_prelocked(uuidkey::Base.PkgId)
   @ Base ./loading.jl:1200
 [3] macro expansion
   @ ./loading.jl:1180 [inlined]
 [4] macro expansion
   @ ./lock.jl:223 [inlined]
 [5] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:1144
in expression starting at /home/fpoulin/Software/ClimaAtmos.jl/test/runtests.jl:1
(ClimaAtmos) pkg> status
Project ClimaAtmos v0.9.0
Status `~/Software/ClimaAtmos.jl/Project.toml`
  [86bc3604] AtmosphericProfilesLibrary v0.1.2
⌅ [3a4d1b5c] ClimaComms v0.3.5
  [d414da3d] ClimaCore v0.10.30
  [cf7c7e5a] ClimaCorePlots v0.2.4
  [c8b6d40d] ClimaCoreVTK v0.7.1
  [595c0a79] ClimaTimeSteppers v0.7.4
  [6a9e3e04] CloudMicrophysics v0.10.2
  [5ae59095] Colors v0.12.10
  [39dd38d3] Dierckx v0.5.3
  [2b5f629d] DiffEqBase v6.122.2
  [459566f4] DiffEqCallbacks v2.26.1
  [31c24e10] Distributions v0.25.87
  [ffbed154] DocStringExtensions v0.9.3
  [442a2c76] FastGaussQuadrature v0.5.0
  [6a3955dd] ImageFiltering v0.7.3
  [e98cc03f] Insolation v0.3.1
  [a98d9a8b] Interpolations v0.14.7
  [8197267c] IntervalSets v0.7.4
  [033835bb] JLD2 v0.4.31
  [984bce1d] LambertW v0.4.6
  [85f8d34a] NCDatasets v0.12.13
  [5da4648a] NVTX v0.3.1
  [1dea7af3] OrdinaryDiffEq v6.49.4
  [a01a1ee8] RRTMGP v0.7.0
  [7181ea78] RootSolvers v0.3.5
  [90137ffa] StaticArrays v1.5.19
  [2913bbd2] StatsBase v0.33.21
  [49b00bb7] SurfaceFluxes v0.6.2
  [b60c26fb] Thermodynamics v0.10.2
  [ddb6d928] YAML v0.4.8
  [ade2ca70] Dates
  [37e2e46d] LinearAlgebra
  [44cfe95a] Pkg v1.8.0
  [de0858da] Printf
  [9a3f8284] Random
  [8dfed614] Test
Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated`
francispoulin commented 1 year ago

I looked around and saw that #1506 mentioned the same issue. I tried the instructions there, copied below, and I am happy to say that the tests ran, all three of them.

julia --project=test -e 'using Pkg; Pkg.develop(path = ".")'
julia --project=test -e 'using Pkg; Pkg.instantiate(;verbose=true)'
julia --color=yes --project=test test/runtests.jl

I wonder whether the docs might need to be updated to reflect this difference?

charleskawczynski commented 1 year ago

Hi @francispoulin, agreed, we should update the docs to show users how to run the ClimaAtmos test suite (there are a few different ways that require different configuration/environment setups).